hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080807/iprscan-20080807-13593980/chunk_1/iprscan-20080807-13593980.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: bm02791 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00330.10.ls Aconitase family (aconitate hydratase) 927.2 6.4e-276 1 PF00330.10.fs Aconitase family (aconitate hydratase) 925.2 2.5e-275 1 PF00694.9.ls Aconitase C-terminal domain 234.6 2e-67 1 PF00694.9.fs Aconitase C-terminal domain 232.7 7.5e-67 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00330.10.fs 1/1 68 507 .. 1 512 [] 925.2 2.5e-275 PF00330.10.ls 1/1 68 507 .. 1 512 [] 927.2 6.4e-276 PF00694.9.fs 1/1 586 716 .. 1 136 [] 232.7 7.5e-67 PF00694.9.ls 1/1 586 716 .. 1 136 [] 234.6 2e-67 Alignments of top-scoring domains: PF00330.10.fs: domain 1 of 1, from 68 to 507: score 925.2, E = 2.5e-275 *->TlyeKildaHvvdpadqdiergtslLylRPdRvlmqdvTspqAflgL Tl+eKi+++H++dpa q+ierg+s+L+lRPdRv+mqd+T+++A+l++ bm02791 68 TLSEKIVYGHLDDPASQEIERGKSYLRLRPDRVAMQDATAQMAMLQF 114 raagrpvrrvdgdadKvsPLSPttitcDHniptqkggekkalEvDlniei +++g+ +++v+ +ti+cDH+i++q+ggek Dl++++ bm02791 115 ISSGLSKVAVP-----------STIHCDHLIEAQVGGEK-----DLRRAK 148 ernkeqydfLeknvkeFgvgfwgpgskrQGIvHqigLEnGftlPGlelqD ++n+e+y+fL+++++++gvgfw+pgs GI+Hqi+LEn +++PG+ bm02791 149 DINQEVYNFLATAGAKYGVGFWKPGS---GIIHQIILEN-YAYPGV---- 190 GeliAYPDtlVGtDSHTpthGgLGaLAfGvGgsEaEhVlAgqplelkkPK +l+GtDSHTp++GgLG++++GvGg++a++V+Ag+p+elk+PK bm02791 191 --------LLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPK 232 vmgikltGklngGitaKDvILkviglltvkGGTGkvVEffGegiddLSme v+g+kltG+l+g++++KDvILkv+g+ltvkGGTG++VE++G+g+d++S++ bm02791 233 VIGVKLTGSLSGWSSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCT 282 gRaTICNMaiEiGAtaGlfppDettfkYlkgrgrapkaeeadeavakwkt g+aTICNM++EiGAt+++fp++++++kYl+++gr ++a+ ade+ +++ bm02791 283 GMATICNMGAEIGATTSVFPYNHRMKKYLSKTGREDIANLADEF---KDH 329 LksDkdAneEPqyDkvveldlsdiePsvtGPttPqdavpiselvpepknN L+ D+++ +yD+ +e++ls+++P+++GP+tP++a+p++e++++++ bm02791 330 LVPDPGC----HYDQLIEINLSELKPHINGPFTPDLAHPVAEVGKVAE-- 373 vldpvkkakaerAlaYmglwpgtqlkeikVdvafIGSCTNssieDlrrAA +++wp ++++v++IGSCTNss+eD+ r+A bm02791 374 ----------------KEGWP------LDIRVGLIGSCTNSSYEDMGRSA 401 sivkgaaaekGkklkpkvkatVvPGSeqVkataEreGLdkiFkeaGfewr +++k+a+a ++lk+k ++t++PGSeq++at+Er+G+++i++++G++++ bm02791 402 AVAKQALA---HGLKCKSQFTITPGSEQIRATIERDGYAQILRDLGGIVL 448 anGCspCiGmndrpDilkeavkkgDekercvsssNRNFeGRqgangrTha an+C+pCiG++dr+Di+k+ ek+++v+s+NRNF+GR++an++Tha bm02791 449 ANACGPCIGQWDRKDIKKG------EKNTIVTSYNRNFTGRNDANPETHA 492 fLaSPalvaAaAiaG<-* f++SP++v+A+AiaG bm02791 493 FVTSPEIVTALAIAG 507 PF00330.10.ls: domain 1 of 1, from 68 to 507: score 927.2, E = 6.4e-276 *->TlyeKildaHvvdpadqdiergtslLylRPdRvlmqdvTspqAflgL Tl+eKi+++H++dpa q+ierg+s+L+lRPdRv+mqd+T+++A+l++ bm02791 68 TLSEKIVYGHLDDPASQEIERGKSYLRLRPDRVAMQDATAQMAMLQF 114 raagrpvrrvdgdadKvsPLSPttitcDHniptqkggekkalEvDlniei +++g+ +++v+ +ti+cDH+i++q+ggek Dl++++ bm02791 115 ISSGLSKVAVP-----------STIHCDHLIEAQVGGEK-----DLRRAK 148 ernkeqydfLeknvkeFgvgfwgpgskrQGIvHqigLEnGftlPGlelqD ++n+e+y+fL+++++++gvgfw+pgs GI+Hqi+LEn +++PG+ bm02791 149 DINQEVYNFLATAGAKYGVGFWKPGS---GIIHQIILEN-YAYPGV---- 190 GeliAYPDtlVGtDSHTpthGgLGaLAfGvGgsEaEhVlAgqplelkkPK +l+GtDSHTp++GgLG++++GvGg++a++V+Ag+p+elk+PK bm02791 191 --------LLIGTDSHTPNGGGLGGICIGVGGADAVDVMAGIPWELKCPK 232 vmgikltGklngGitaKDvILkviglltvkGGTGkvVEffGegiddLSme v+g+kltG+l+g++++KDvILkv+g+ltvkGGTG++VE++G+g+d++S++ bm02791 233 VIGVKLTGSLSGWSSPKDVILKVAGILTVKGGTGAIVEYHGPGVDSISCT 282 gRaTICNMaiEiGAtaGlfppDettfkYlkgrgrapkaeeadeavakwkt g+aTICNM++EiGAt+++fp++++++kYl+++gr ++a+ ade+ +++ bm02791 283 GMATICNMGAEIGATTSVFPYNHRMKKYLSKTGREDIANLADEF---KDH 329 LksDkdAneEPqyDkvveldlsdiePsvtGPttPqdavpiselvpepknN L+ D+++ +yD+ +e++ls+++P+++GP+tP++a+p++e++++++ bm02791 330 LVPDPGC----HYDQLIEINLSELKPHINGPFTPDLAHPVAEVGKVAE-- 373 vldpvkkakaerAlaYmglwpgtqlkeikVdvafIGSCTNssieDlrrAA +++wp ++++v++IGSCTNss+eD+ r+A bm02791 374 ----------------KEGWP------LDIRVGLIGSCTNSSYEDMGRSA 401 sivkgaaaekGkklkpkvkatVvPGSeqVkataEreGLdkiFkeaGfewr +++k+a+a ++lk+k ++t++PGSeq++at+Er+G+++i++++G++++ bm02791 402 AVAKQALA---HGLKCKSQFTITPGSEQIRATIERDGYAQILRDLGGIVL 448 anGCspCiGmndrpDilkeavkkgDekercvsssNRNFeGRqgangrTha an+C+pCiG++dr+Di+k+ ek+++v+s+NRNF+GR++an++Tha bm02791 449 ANACGPCIGQWDRKDIKKG------EKNTIVTSYNRNFTGRNDANPETHA 492 fLaSPalvaAaAiaG<-* f++SP++v+A+AiaG bm02791 493 FVTSPEIVTALAIAG 507 PF00694.9.fs: domain 1 of 1, from 586 to 716: score 232.7, E = 7.5e-67 *->makflklrGvatpdfisnvdtdliipkqflgtianiglgnilfegwr ++++k++G++t+d+is+++++l+++++++++++n+++g+i++e+++ bm02791 586 LQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINIENGK 632 ankttglptgenpmqvcmdvvdnaekYkkegakilViageNfGcGSSREH an +++++t+e + v+d+a+ Ykk+g++++Vi++eN+G+GSSREH bm02791 633 ANSVRNAVTQEFG-----PVPDTARYYKKHGIRWVVIGDENYGEGSSREH 677 AAwalrdlGikavIakSFarIfenNliknglLPlefpqe<-* AA+++r+lG++a+I+kSFarI+e+Nl+k+glLPl+f+++ bm02791 678 AALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFADP 716 PF00694.9.ls: domain 1 of 1, from 586 to 716: score 234.6, E = 2e-67 *->makflklrGvatpdfisnvdtdliipkqflgtianiglgnilfegwr ++++k++G++t+d+is+++++l+++++++++++n+++g+i++e+++ bm02791 586 LQILIKVKGKCTTDHISAAGPWLKFRGHLDNISNNLLIGAINIENGK 632 ankttglptgenpmqvcmdvvdnaekYkkegakilViageNfGcGSSREH an +++++t+e + v+d+a+ Ykk+g++++Vi++eN+G+GSSREH bm02791 633 ANSVRNAVTQEFG-----PVPDTARYYKKHGIRWVVIGDENYGEGSSREH 677 AAwalrdlGikavIakSFarIfenNliknglLPlefpqe<-* AA+++r+lG++a+I+kSFarI+e+Nl+k+glLPl+f+++ bm02791 678 AALEPRHLGGRAIITKSFARIHETNLKKQGLLPLTFADP 716 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