hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-14114286/chunk_1/iprscan-20080807-14114286.nocrc
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Query sequence: bm02855
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00400.22.ls WD domain, G-beta repeat                       156.7    5.4e-44   6
PF00400.22.fs WD domain, G-beta repeat                       148.0    2.3e-41   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00400.22.fs   1/6      56    92 ..     1    33 [.    16.8  0.00093
PF00400.22.fs   2/6     101   139 ..     1    38 []    25.0  4.5e-06
PF00400.22.ls   2/6     101   139 ..     1    38 []    27.0  6.4e-05
PF00400.22.ls   3/6     143   180 ..     1    38 []    26.8    7e-05
PF00400.22.fs   3/6     150   180 ..     7    38 .]    25.6    3e-06
PF00400.22.ls   4/6     185   222 ..     1    38 []    22.3   0.0016
PF00400.22.fs   4/6     185   222 ..     1    38 []    20.4  8.8e-05
PF00400.22.fs   5/6     266   303 ..     1    38 []    12.7    0.013
PF00400.22.ls   6/6     307   345 ..     1    38 []    49.5    1e-11
PF00400.22.fs   6/6     307   345 ..     1    38 []    47.5    2e-12

Alignments of top-scoring domains:
PF00400.22.fs: domain 1 of 6, from 56 to 92: score 16.8, E = 0.00093
                   *->geck.vl.gHtstVtcvafspd..sgpllasgSrDgt<-*
                      ++   + +gHt +V ++afs  +++g +l+s++ Dg+   
     bm02855    56    RQTPlTCsGHTRPVVDLAFSGItpYGYFLISACKDGK    92   

PF00400.22.fs: domain 2 of 6, from 101 to 139: score 25.0, E = 4.5e-06
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      g+ ++++ gH+++V+    + d  +  a++ +D t k+Wd   
     bm02855   101    GDWIgTFlGHKGAVWGATLNKD-ATKAATAAADFTAKVWD    139  

PF00400.22.ls: domain 2 of 6, from 101 to 139: score 27.0, E = 6.4e-05
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      g+ ++++ gH+++V+    + d  +  a++ +D t k+Wd   
     bm02855   101    GDWIgTFlGHKGAVWGATLNKD-ATKAATAAADFTAKVWD    139  

PF00400.22.ls: domain 3 of 6, from 143 to 180: score 26.8, E = 7e-05
                   *->geck.vlgHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      g+ + +l+H++ V  v+f +d +++l++g+ D+ ++i+d   
     bm02855   143    GDELmTLAHKHIVKTVDFTQD-SNYLLTGGQDKLLRIYD    180  

PF00400.22.fs: domain 3 of 6, from 150 to 180: score 25.6, E = 3e-06
                   *->gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      +H++ V  v+f +d +++l++g+ D+ ++i+d   
     bm02855   150    AHKHIVKTVDFTQD-SNYLLTGGQDKLLRIYD    180  

PF00400.22.ls: domain 4 of 6, from 185 to 222: score 22.3, E = 0.0016
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                          ++++gHts++    ++ +  ++++s+ + +t+++Wd   
     bm02855   185    EAEPkEIsGHTSGIKKALWCSE-DKQILSADD-KTVRLWD    222  

PF00400.22.fs: domain 4 of 6, from 185 to 222: score 20.4, E = 8.8e-05
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                          ++++gHts++    ++ +  ++++s+ + +t+++Wd   
     bm02855   185    EAEPkEIsGHTSGIKKALWCSE-DKQILSADD-KTVRLWD    222  

PF00400.22.fs: domain 5 of 6, from 266 to 303: score 12.7, E = 0.013
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       ++++++++  +t+++ + +p+  ++l+ g++D +++ +d   
     bm02855   266    LDPIkSFeAP-ATINSASLHPE-KEFLVAGGEDFKLYKYD    303  

PF00400.22.ls: domain 6 of 6, from 307 to 345: score 49.5, E = 1e-11
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      ge + +++gH +++ cv+fspd g+l asgS+Dgt+++W    
     bm02855   307    GEELeSYkGHFGPIHCVRFSPD-GELYASGSEDGTLRLWQ    345  

PF00400.22.fs: domain 6 of 6, from 307 to 345: score 47.5, E = 2e-12
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      ge + +++gH +++ cv+fspd g+l asgS+Dgt+++W    
     bm02855   307    GEELeSYkGHFGPIHCVRFSPD-GELYASGSEDGTLRLWQ    345  

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