hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-14114286/chunk_1/iprscan-20080807-14114286.nocrc
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Query sequence: bm02855
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00320                                                 177.7    1.1e-48   7

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00320    1/7      55    97 ..     1    46 []    12.4      5.3
SM00320    2/7     100   139 ..     1    46 []    30.0  0.00033
SM00320    3/7     142   180 ..     1    46 []    36.3    4e-06
SM00320    4/7     184   222 ..     1    46 []    28.4    0.001
SM00320    5/7     225   262 ..     1    46 []     2.2  2.2e+02
SM00320    6/7     265   303 ..     1    46 []    16.7      1.1
SM00320    7/7     306   345 ..     1    46 []    51.6  9.9e-11

Alignments of top-scoring domains:
SM00320: domain 1 of 7, from 55 to 97: score 12.4, E = 5.3
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       ++   t++gHt   pV ++afs      +++ +l+s+++Dg+  l 
     bm02855    55    MrQTPLTCSGHTR--PVVDLAFSGIT---PYGYFLISACkDGKPMLR 96   

                   d<-*
                       
     bm02855    97 Q    97   

SM00320: domain 2 of 7, from 100 to 139: score 30.0, E = 0.00033
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t+  + t+ gH+g  +V++ + + d       +  a++  D t ++W
     bm02855   100    TgDWIGTFLGHKG--AVWGATLNKDA------TKAATAAaDFTAKVW 138  

                   d<-*
                   d   
     bm02855   139 D    139  

SM00320: domain 3 of 7, from 142 to 180: score 36.3, E = 4e-06
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++  l+tl  H++   V +v+f +d+      n+l++g++D+ +r++
     bm02855   142    SgDELMTLA-HKH--IVKTVDFTQDS------NYLLTGGqDKLLRIY 179  

                   d<-*
                   d   
     bm02855   180 D    180  

SM00320: domain 4 of 7, from 184 to 222: score 28.4, E = 0.001
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgsDgtirlWd
                      +    ++++gHt+  ++    +++ +      ++++s++D+t+rlWd
     bm02855   184    PeAEPKEISGHTS--GIKKALWCSED------KQILSADDKTVRLWD 222  

                   <-*
                      
     bm02855     -     -    

SM00320: domain 5 of 7, from 225 to 262: score 2.2, E = 2.2e+02
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgsDgtirlWd
                      t + +++l+  +   +V+s+ + p g      ++l+    ++i + +
     bm02855   225    TmTEVKSLN-FNM--SVSSMEYIPEG------EILVITYGRSIAFHS 262  

                   <-*
                      
     bm02855     -     -    

SM00320: domain 6 of 7, from 265 to 303: score 16.7, E = 1.1
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +  ++++++   +   ++s + +p        ++l++g++D +++ +
     bm02855   265    SlDPIKSFE-APA--TINSASLHPEK------EFLVAGGeDFKLYKY 302  

                   d<-*
                   d   
     bm02855   303 D    303  

SM00320: domain 7 of 7, from 306 to 345: score 51.6, E = 9.9e-11
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +++ l ++kgH g  p+++v+fspdg      +l asgs+Dgt+rlW
     bm02855   306    SgEELESYKGHFG--PIHCVRFSPDG------ELYASGSeDGTLRLW 344  

                   d<-*
                       
     bm02855   345 Q    345  

//