hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-14235171/chunk_1/iprscan-20080807-14235171.nocrc
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Query sequence: bm02866
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00001.12.ls 7 transmembrane receptor (rhodopsin family)     26.1    9.2e-09   1
PF00001.12.fs 7 transmembrane receptor (rhodopsin family)     24.2    2.3e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00001.12.fs   1/1      36   295 ..     1   272 []    24.2  2.3e-08
PF00001.12.ls   1/1      36   295 ..     1   272 []    26.1  9.2e-09

Alignments of top-scoring domains:
PF00001.12.fs: domain 1 of 1, from 36 to 295: score 24.2, E = 2.3e-08
                   *->GNlLVilvilrtkklrtptnifilNLAvADLLflltlppwalyyl..
                      GN+  ++v+lrt  lr    +++ +L+v DLL +++ +p  l+++++
     bm02866    36    GNGALLVVVLRTPGLR--DALYLAHLCVVDLLAAASIMPLGLLAApp 80   

                   .vggedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryr
                   +  g +  +G+a C+   +l  + + a  l  +a+ + RY  IvhPlr  
     bm02866    81 pGLG-RVRLGPAPCRAARFLSAALLPACTLGVAALGLARYRLIVHPLRPG 129  

                   rrrtsprrAkvvillvWvlalllslPpllfswvktveegngvvnvttCli
                   +r  +    ++v+ +vW++a ll+ + ll+    +++ + +     +C++
     bm02866   130 SRPPP----VLVLTAVWAAAGLLGALSLLG----PPPAPPPA--PARCSV 169  

                   dfpevstasvktwlvsyallstlvgFvlPllvilvcYtrIlrtlrkrark
                                  ++  l  l++F lP l++l +Y+ I+ ++r++a +
     bm02866   170 LAGGLG---------PFRPLWALLAFALPALLLLGAYGGIFVVARRAALR 210  

                   gas.....................kkrsskerkaaktllvvvvvFvlCWl
                    + + ++++ ++++ +++ +  ++ + +    kaa   ++ v+ F+ CWl
     bm02866   211 PPRpargsrlrsdsldsrlsilppLRPRLPGGKAALAPALAVGQFAACWL 260  

                   Pyfivllldtlc.lsiimsssCelervlptallvtlwLayvNsclNPiIY
                   Py  + l  +                    a  + +w+ay+  +  P++Y
     bm02866   261 PYGCACLAPAARaAE---------------AEAAVTWVAYSAFAAHPFLY 295  

                   <-*
                      
     bm02866     -     -    

PF00001.12.ls: domain 1 of 1, from 36 to 295: score 26.1, E = 9.2e-09
                   *->GNlLVilvilrtkklrtptnifilNLAvADLLflltlppwalyyl..
                      GN+  ++v+lrt  lr    +++ +L+v DLL +++ +p  l+++++
     bm02866    36    GNGALLVVVLRTPGLR--DALYLAHLCVVDLLAAASIMPLGLLAApp 80   

                   .vggedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryr
                   +  g +  +G+a C+   +l  + + a  l  +a+ + RY  IvhPlr  
     bm02866    81 pGLG-RVRLGPAPCRAARFLSAALLPACTLGVAALGLARYRLIVHPLRPG 129  

                   rrrtsprrAkvvillvWvlalllslPpllfswvktveegngvvnvttCli
                   +r  +    ++v+ +vW++a ll+ + ll+    +++ + +     +C++
     bm02866   130 SRPPP----VLVLTAVWAAAGLLGALSLLG----PPPAPPPA--PARCSV 169  

                   dfpevstasvktwlvsyallstlvgFvlPllvilvcYtrIlrtlrkrark
                                  ++  l  l++F lP l++l +Y+ I+ ++r++a +
     bm02866   170 LAGGLG---------PFRPLWALLAFALPALLLLGAYGGIFVVARRAALR 210  

                   gas.....................kkrsskerkaaktllvvvvvFvlCWl
                    + + ++++ ++++ +++ +  ++ + +    kaa   ++ v+ F+ CWl
     bm02866   211 PPRpargsrlrsdsldsrlsilppLRPRLPGGKAALAPALAVGQFAACWL 260  

                   Pyfivllldtlc.lsiimsssCelervlptallvtlwLayvNsclNPiIY
                   Py  + l  +                    a  + +w+ay+  +  P++Y
     bm02866   261 PYGCACLAPAARaAE---------------AEAAVTWVAYSAFAAHPFLY 295  

                   <-*
                      
     bm02866     -     -    

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