hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-14354549/chunk_1/iprscan-20080807-14354549.nocrc
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Query sequence: bm02930
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
PF04658.4.ls TAFII55 protein conserved region              379.7   4.2e-111   1
PF04658.4.fs TAFII55 protein conserved region              378.0   1.4e-110   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
PF04658.4.fs   1/1      25   191 ..     1   215 []   378.0 1.4e-110
PF04658.4.ls   1/1      25   191 ..     1   215 []   379.7 4.2e-111

Alignments of top-scoring domains:
PF04658.4.fs: domain 1 of 1, from 25 to 191: score 378.0, E = 1.4e-110
                   *->iEeQfILRvPpGevaervrkainsdgsvsdkdeLsIkfspDgRhavV
                      +E+QfILR+Pp e+a++vr+a++s g+v++kd+L+I+++pDgRh++V
     bm02930    25    LESQFILRLPP-EYASTVRRAVQS-GHVNLKDRLTIELHPDGRHGIV 69   

                   rignvlLpAKLVDLPtViEslKTlDkKtlyKtADisQMLvCtRPiqEEEE
                   r+++v+L++KLVDLP+V+EslKT+DkKt+yKtADi+QMLv+t        
     bm02930    70 RVDRVPLASKLVDLPCVMESLKTIDKKTFYKTADICQMLVST-------- 111  

                   vYaleaidkedlvvkefegieaeppEnkeeflkgenvastspkeakklak
                                    +g++++p+E        e+vast+pk++kk++k
     bm02930   112 ---------------V-DGDLYPPVE--------EPVASTDPKASKKKDK 137  

                   ekaekkyeYpHGITPPlKnVRKRRFRKtkkknPdvkqrverdllktieap
                   +k ekk++++HGIT PlKnVRKRRFRKt+kk             k+ie+p
     bm02930   138 DK-EKKFIWNHGITLPLKNVRKRRFRKTAKK-------------KYIESP 173  

                   eVEkEvkrLLrsDeeAvs<-*
                   +VEkEvkrLL++D+eAvs   
     bm02930   174 DVEKEVKRLLSTDAEAVS    191  

PF04658.4.ls: domain 1 of 1, from 25 to 191: score 379.7, E = 4.2e-111
                   *->iEeQfILRvPpGevaervrkainsdgsvsdkdeLsIkfspDgRhavV
                      +E+QfILR+Pp e+a++vr+a++s g+v++kd+L+I+++pDgRh++V
     bm02930    25    LESQFILRLPP-EYASTVRRAVQS-GHVNLKDRLTIELHPDGRHGIV 69   

                   rignvlLpAKLVDLPtViEslKTlDkKtlyKtADisQMLvCtRPiqEEEE
                   r+++v+L++KLVDLP+V+EslKT+DkKt+yKtADi+QMLv+t        
     bm02930    70 RVDRVPLASKLVDLPCVMESLKTIDKKTFYKTADICQMLVST-------- 111  

                   vYaleaidkedlvvkefegieaeppEnkeeflkgenvastspkeakklak
                                    +g++++p+E        e+vast+pk++kk++k
     bm02930   112 ---------------V-DGDLYPPVE--------EPVASTDPKASKKKDK 137  

                   ekaekkyeYpHGITPPlKnVRKRRFRKtkkknPdvkqrverdllktieap
                   +k ekk++++HGIT PlKnVRKRRFRKt+kk             k+ie+p
     bm02930   138 DK-EKKFIWNHGITLPLKNVRKRRFRKTAKK-------------KYIESP 173  

                   eVEkEvkrLLrsDeeAvs<-*
                   +VEkEvkrLL++D+eAvs   
     bm02930   174 DVEKEVKRLLSTDAEAVS    191  

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