# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Obm02949.fasta.nr -Q bm02949.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 bm02949, 510 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6824326 sequences Expectation_n fit: rho(ln(x))= 5.2860+/-0.000184; mu= 11.3099+/- 0.010 mean_var=68.6305+/-13.419, 0's: 39 Z-trim: 43 B-trim: 0 in 0/65 Lambda= 0.154816 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|1352307|sp|P49005.1|DPOD2_HUMAN DNA polymerase ( 469) 3145 711.4 1.2e-202 gi|189055337|dbj|BAG35221.1| unnamed protein produ ( 469) 3140 710.2 2.6e-202 gi|67970282|dbj|BAE01484.1| unnamed protein produc ( 469) 3113 704.2 1.7e-200 gi|194209519|ref|XP_001915605.1| PREDICTED: simila ( 469) 3006 680.3 2.6e-193 gi|109940074|sp|P49004.2|DPOD2_BOVIN DNA polymeras ( 469) 2999 678.7 7.8e-193 gi|13097135|gb|AAH03342.1| Polymerase (DNA directe ( 469) 2981 674.7 1.3e-191 gi|3913507|sp|O35654.1|DPOD2_MOUSE DNA polymerase ( 469) 2980 674.5 1.5e-191 gi|81884493|sp|Q6AXY4.1|DPOD2_RAT DNA polymerase s ( 469) 2978 674.1 2e-191 gi|1008460|gb|AAC48475.1| DNA polymerase delta sma ( 469) 2971 672.5 5.9e-191 gi|74010360|ref|XP_539802.2| PREDICTED: similar to ( 469) 2970 672.3 6.9e-191 gi|126303407|ref|XP_001379694.1| PREDICTED: simila ( 471) 2760 625.4 9.1e-177 gi|149557343|ref|XP_001520117.1| PREDICTED: simila ( 471) 2706 613.3 3.9e-173 gi|114613131|ref|XP_528027.2| PREDICTED: polymeras ( 455) 2531 574.2 2.2e-161 gi|109066706|ref|XP_001093360.1| PREDICTED: polyme ( 455) 2520 571.8 1.2e-160 gi|49522345|gb|AAH75341.1| Polymerase (DNA directe ( 463) 2207 501.8 1.4e-139 gi|13431459|sp|O93610.1|DPOD2_XENLA DNA polymerase ( 463) 2193 498.7 1.2e-138 gi|16501182|emb|CAD10079.1| novel protein similar ( 467) 2145 488.0 2e-135 gi|169145958|emb|CAQ15575.1| polymerase (DNA direc ( 467) 2144 487.8 2.4e-135 gi|28279582|gb|AAH45410.1| Pold2 protein [Danio re ( 467) 2140 486.9 4.4e-135 gi|149047648|gb|EDM00318.1| polymerase (DNA direct ( 369) 1927 439.2 7.6e-121 gi|148708618|gb|EDL40565.1| polymerase (DNA direct ( 367) 1893 431.7 1.5e-118 gi|47212927|emb|CAF90299.1| unnamed protein produc ( 457) 1881 429.0 1.1e-117 gi|72043034|ref|XP_782368.1| PREDICTED: similar to ( 442) 1594 364.9 2.2e-98 gi|159572438|emb|CAP19071.1| polymerase (DNA direc ( 241) 1489 341.3 1.5e-91 gi|190587316|gb|EDV27358.1| hypothetical protein T ( 448) 1437 329.9 7.9e-88 gi|156217079|gb|EDO38003.1| predicted protein [Nem ( 514) 1414 324.8 3.1e-86 gi|108876529|gb|EAT40754.1| DNA polymerase delta s ( 455) 1314 302.4 1.5e-79 gi|108870916|gb|EAT35141.1| DNA polymerase delta s ( 455) 1313 302.2 1.7e-79 gi|108876528|gb|EAT40753.1| DNA polymerase delta s ( 458) 1308 301.1 3.8e-79 gi|148708617|gb|EDL40564.1| polymerase (DNA direct ( 192) 1286 295.9 5.6e-78 gi|157013576|gb|EAA14861.4| AGAP008910-PA [Anophel ( 458) 1272 293.0 9.9e-77 gi|162675685|gb|EDQ62177.1| predicted protein [Phy ( 527) 1265 291.5 3.3e-76 gi|149047647|gb|EDM00317.1| polymerase (DNA direct ( 192) 1257 289.4 5e-76 gi|167870072|gb|EDS33455.1| DNA polymerase delta s ( 455) 1257 289.7 1e-75 gi|13431489|sp|Q9LRE5|DPOD2_ORYSJ DNA polymerase d ( 429) 1198 276.5 8.9e-72 gi|194195286|gb|EDX08862.1| GD13645 [Drosophila si ( 431) 1194 275.6 1.7e-71 gi|13431497|sp|Q9W088|DPOD2_DROME DNA polymerase d ( 431) 1192 275.1 2.3e-71 gi|193654843|ref|XP_001950214.1| PREDICTED: simila ( 451) 1189 274.5 3.7e-71 gi|190652981|gb|EDV50224.1| GG14822 [Drosophila er ( 431) 1188 274.2 4.2e-71 gi|21064173|gb|AAM29316.1| AT27586p [Drosophila me ( 431) 1186 273.8 5.7e-71 gi|194179292|gb|EDW92903.1| GE21185 [Drosophila ya ( 431) 1164 268.9 1.7e-69 gi|22531160|gb|AAM97084.1| putative DNA polymerase ( 440) 1158 267.5 4.4e-69 gi|190623244|gb|EDV38768.1| GF24834 [Drosophila an ( 432) 1155 266.9 7e-69 gi|42569857|ref|NP_181742.2| POLD2 (DNA POLYMERASE ( 441) 1155 266.9 7.1e-69 gi|147776498|emb|CAN71889.1| hypothetical protein ( 439) 1153 266.4 9.6e-69 gi|157348504|emb|CAO23396.1| unnamed protein produ ( 439) 1153 266.4 9.6e-69 gi|163771356|gb|EDQ85024.1| predicted protein [Mon ( 999) 1156 267.3 1.2e-68 gi|6063533|dbj|BAA85393.1| unnamed protein product ( 445) 1145 264.6 3.4e-68 gi|13431449|sp|O48520|DPOD2_ARATH DNA polymerase d ( 456) 1144 264.4 4e-68 gi|28317170|gb|AAD46843.2|AF160903_1 HL03874p [Dro ( 398) 1126 260.4 5.8e-67 >>gi|1352307|sp|P49005.1|DPOD2_HUMAN DNA polymerase subu (469 aa) initn: 3145 init1: 3145 opt: 3145 Z-score: 3793.4 bits: 711.4 E(): 1.2e-202 Smith-Waterman score: 3145; 100.000% identity (100.000% similar) in 469 aa overlap (42-510:1-469) 20 30 40 50 60 70 bm0294 QGQQECLCVFAVNLLGLGEAVWTKQVRSVAMFSEQAAQRAHTLLSPPSANNATFARVPVA :::::::::::::::::::::::::::::: gi|135 MFSEQAAQRAHTLLSPPSANNATFARVPVA 10 20 30 80 90 100 110 120 130 bm0294 TYTNSSQPFRLGERSFSRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQPEEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|135 TYTNSSQPFRLGERSFSRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQPEEK 40 50 60 70 80 90 140 150 160 170 180 190 bm0294 CCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKGTIDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|135 CCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKGTIDV 100 110 120 130 140 150 200 210 220 230 240 250 bm0294 SKLVTGTVLAVFGSVRDDGKFLVEDYCFADLAPQKPAPPLDTDRFVLLVSGLGLGGGGGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|135 SKLVTGTVLAVFGSVRDDGKFLVEDYCFADLAPQKPAPPLDTDRFVLLVSGLGLGGGGGE 160 170 180 190 200 210 260 270 280 290 300 310 bm0294 SLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLTKKTQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|135 SLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLTKKTQA 220 230 240 250 260 270 320 330 340 350 360 370 bm0294 ASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLVTN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|135 ASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLVTN 280 290 300 310 320 330 380 390 400 410 420 430 bm0294 PYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPFYKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|135 PYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPFYKT 340 350 360 370 380 390 440 450 460 470 480 490 bm0294 DPFIFPECPHVYFCGNTPSFGSKIIRGPEDQTVLLVTVPDFSATQTACLVNLRSLACQPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|135 DPFIFPECPHVYFCGNTPSFGSKIIRGPEDQTVLLVTVPDFSATQTACLVNLRSLACQPI 400 410 420 430 440 450 500 510 bm0294 SFSGFGAEDDDLGGLGLGP ::::::::::::::::::: gi|135 SFSGFGAEDDDLGGLGLGP 460 >>gi|189055337|dbj|BAG35221.1| unnamed protein product [ (469 aa) initn: 3140 init1: 3140 opt: 3140 Z-score: 3787.4 bits: 710.2 E(): 2.6e-202 Smith-Waterman score: 3140; 99.787% identity (100.000% similar) in 469 aa overlap (42-510:1-469) 20 30 40 50 60 70 bm0294 QGQQECLCVFAVNLLGLGEAVWTKQVRSVAMFSEQAAQRAHTLLSPPSANNATFARVPVA :::::::::::::::::::::::::::::: gi|189 MFSEQAAQRAHTLLSPPSANNATFARVPVA 10 20 30 80 90 100 110 120 130 bm0294 TYTNSSQPFRLGERSFSRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQPEEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|189 TYTNSSQPFRLGERSFSRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQPEEK 40 50 60 70 80 90 140 150 160 170 180 190 bm0294 CCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKGTIDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|189 CCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKGTIDV 100 110 120 130 140 150 200 210 220 230 240 250 bm0294 SKLVTGTVLAVFGSVRDDGKFLVEDYCFADLAPQKPAPPLDTDRFVLLVSGLGLGGGGGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|189 SKLVTGTVLAVFGSVRDDGKFLVEDYCFADLAPQKPAPPLDTDRFVLLVSGLGLGGGGGE 160 170 180 190 200 210 260 270 280 290 300 310 bm0294 SLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLTKKTQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|189 SLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLTKKTQA 220 230 240 250 260 270 320 330 340 350 360 370 bm0294 ASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLVTN .::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|189 TSVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLVTN 280 290 300 310 320 330 380 390 400 410 420 430 bm0294 PYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPFYKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|189 PYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPFYKT 340 350 360 370 380 390 440 450 460 470 480 490 bm0294 DPFIFPECPHVYFCGNTPSFGSKIIRGPEDQTVLLVTVPDFSATQTACLVNLRSLACQPI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|189 DPFIFPECPHVYFCGNTPSFGSKIIRGPEDQTVLLVTVPDFSATQTACLVNLRSLACQPI 400 410 420 430 440 450 500 510 bm0294 SFSGFGAEDDDLGGLGLGP ::::::::::::::::::: gi|189 SFSGFGAEDDDLGGLGLGP 460 >>gi|67970282|dbj|BAE01484.1| unnamed protein product [M (469 aa) initn: 3113 init1: 3113 opt: 3113 Z-score: 3754.8 bits: 704.2 E(): 1.7e-200 Smith-Waterman score: 3113; 98.934% identity (99.787% similar) in 469 aa overlap (42-510:1-469) 20 30 40 50 60 70 bm0294 QGQQECLCVFAVNLLGLGEAVWTKQVRSVAMFSEQAAQRAHTLLSPPSANNATFARVPVA :::::::::.:::::::::::::::::::: gi|679 MFSEQAAQRTHTLLSPPSANNATFARVPVA 10 20 30 80 90 100 110 120 130 bm0294 TYTNSSQPFRLGERSFSRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQPEEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|679 TYTNSSQPFRLGERSFSRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQPEEK 40 50 60 70 80 90 140 150 160 170 180 190 bm0294 CCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKGTIDV ::::::::::::::::::::.::::::::::::::::::::::::::::::::::::::: gi|679 CCVVGTLFKAMPLQPSILREISEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKGTIDV 100 110 120 130 140 150 200 210 220 230 240 250 bm0294 SKLVTGTVLAVFGSVRDDGKFLVEDYCFADLAPQKPAPPLDTDRFVLLVSGLGLGGGGGE :::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::: gi|679 SKLVTGTVLAVFGSVRDDGKFLVEDHCFADLAPQKPAPPLDTDRFVLLVSGLGLGGGGGE 160 170 180 190 200 210 260 270 280 290 300 310 bm0294 SLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLTKKTQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|679 SLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLTKKTQA 220 230 240 250 260 270 320 330 340 350 360 370 bm0294 ASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLVTN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|679 ASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLVTN 280 290 300 310 320 330 380 390 400 410 420 430 bm0294 PYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPFYKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|679 PYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPFYKT 340 350 360 370 380 390 440 450 460 470 480 490 bm0294 DPFIFPECPHVYFCGNTPSFGSKIIRGPEDQTVLLVTVPDFSATQTACLVNLRSLACQPI ::::: :::::::::::::::::::.:::::::::::::::::::::::::::::::::: gi|679 DPFIFLECPHVYFCGNTPSFGSKIIQGPEDQTVLLVTVPDFSATQTACLVNLRSLACQPI 400 410 420 430 440 450 500 510 bm0294 SFSGFGAEDDDLGGLGLGP ::::::::::::::::::: gi|679 SFSGFGAEDDDLGGLGLGP 460 >>gi|194209519|ref|XP_001915605.1| PREDICTED: similar to (469 aa) initn: 3006 init1: 3006 opt: 3006 Z-score: 3625.6 bits: 680.3 E(): 2.6e-193 Smith-Waterman score: 3006; 95.309% identity (98.721% similar) in 469 aa overlap (42-510:1-469) 20 30 40 50 60 70 bm0294 QGQQECLCVFAVNLLGLGEAVWTKQVRSVAMFSEQAAQRAHTLLSPPSANNATFARVPVA :::::::::::::::::.:::::::::::: gi|194 MFSEQAAQRAHTLLSPPTANNATFARVPVA 10 20 30 80 90 100 110 120 130 bm0294 TYTNSSQPFRLGERSFSRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQPEEK ::::::::::::::::.:::::::::::::::::: .::::.::::: .:::::::: :: gi|194 TYTNSSQPFRLGERSFGRQYAHIYATRLIQMRPFLVSRAQQRWGSGVQIKKLCELQPGEK 40 50 60 70 80 90 140 150 160 170 180 190 bm0294 CCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKGTIDV :::::::::::::::::::::::::::::::::::::::::::.::::::::::.::::: gi|194 CCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELILEDELQRIKLEGTIDV 100 110 120 130 140 150 200 210 220 230 240 250 bm0294 SKLVTGTVLAVFGSVRDDGKFLVEDYCFADLAPQKPAPPLDTDRFVLLVSGLGLGGGGGE :::::::::::.::::::::: :::.:::.:::::::: ::::::::::::::::::::: gi|194 SKLVTGTVLAVLGSVRDDGKFQVEDHCFAELAPQKPAPLLDTDRFVLLVSGLGLGGGGGE 160 170 180 190 200 210 260 270 280 290 300 310 bm0294 SLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLTKKTQA ::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::: gi|194 SLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHNTQSRDSINKAKYLTKKTQA 220 230 240 250 260 270 320 330 340 350 360 370 bm0294 ASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLVTN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 ASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLVTN 280 290 300 310 320 330 380 390 400 410 420 430 bm0294 PYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPFYKT ::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::: gi|194 PYQATIDGVRFLGTSGQNVSDIFRYSGMEDHLEILEWTLRVRHISPTAPDTLGCYPFYKT 340 350 360 370 380 390 440 450 460 470 480 490 bm0294 DPFIFPECPHVYFCGNTPSFGSKIIRGPEDQTVLLVTVPDFSATQTACLVNLRSLACQPI :::.::::::::::::::::::::::: ::::::::.:::::.::::::::::::::::: gi|194 DPFVFPECPHVYFCGNTPSFGSKIIRGLEDQTVLLVAVPDFSTTQTACLVNLRSLACQPI 400 410 420 430 440 450 500 510 bm0294 SFSGFGAEDDDLGGLGLGP :::::::::.::::::::: gi|194 SFSGFGAEDEDLGGLGLGP 460 >>gi|109940074|sp|P49004.2|DPOD2_BOVIN DNA polymerase su (469 aa) initn: 2999 init1: 2999 opt: 2999 Z-score: 3617.2 bits: 678.7 E(): 7.8e-193 Smith-Waterman score: 2999; 95.522% identity (98.721% similar) in 469 aa overlap (42-510:1-469) 20 30 40 50 60 70 bm0294 QGQQECLCVFAVNLLGLGEAVWTKQVRSVAMFSEQAAQRAHTLLSPPSANNATFARVPVA :::::::::::::::::::.:::::::::. gi|109 MFSEQAAQRAHTLLSPPSASNATFARVPVV 10 20 30 80 90 100 110 120 130 bm0294 TYTNSSQPFRLGERSFSRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQPEEK ::::::::::::::::::::::::::::::::::: .::::.::::: ::::::::: :: gi|109 TYTNSSQPFRLGERSFSRQYAHIYATRLIQMRPFLVSRAQQRWGSGVLVKKLCELQPGEK 40 50 60 70 80 90 140 150 160 170 180 190 bm0294 CCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKGTIDV :::::::::::::::::::::::::::::::::::::::::::.::::::::::.::::: gi|109 CCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELILEDELQRIKLEGTIDV 100 110 120 130 140 150 200 210 220 230 240 250 bm0294 SKLVTGTVLAVFGSVRDDGKFLVEDYCFADLAPQKPAPPLDTDRFVLLVSGLGLGGGGGE :::::::::::.::. :::::::::.::: ::::::: :::::::::::::::::::::: gi|109 SKLVTGTVLAVLGSAGDDGKFLVEDHCFAGLAPQKPACPLDTDRFVLLVSGLGLGGGGGE 160 170 180 190 200 210 260 270 280 290 300 310 bm0294 SLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLTKKTQA ::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::: gi|109 SLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHNTQSRDSINKAKYLTKKTQA 220 230 240 250 260 270 320 330 340 350 360 370 bm0294 ASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLVTN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 ASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLVTN 280 290 300 310 320 330 380 390 400 410 420 430 bm0294 PYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPFYKT :::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::: gi|109 PYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLQVRHISPTAPDTLGCYPFYKT 340 350 360 370 380 390 440 450 460 470 480 490 bm0294 DPFIFPECPHVYFCGNTPSFGSKIIRGPEDQTVLLVTVPDFSATQTACLVNLRSLACQPI :::::::::::::::::::::::::.::::::::::.:::::.::::::::::::::::: gi|109 DPFIFPECPHVYFCGNTPSFGSKIIQGPEDQTVLLVAVPDFSTTQTACLVNLRSLACQPI 400 410 420 430 440 450 500 510 bm0294 SFSGFGAEDDDLGGLGLGP :::::::::.::::::::: gi|109 SFSGFGAEDEDLGGLGLGP 460 >>gi|13097135|gb|AAH03342.1| Polymerase (DNA directed), (469 aa) initn: 2981 init1: 2981 opt: 2981 Z-score: 3595.5 bits: 674.7 E(): 1.3e-191 Smith-Waterman score: 2981; 94.243% identity (98.507% similar) in 469 aa overlap (42-510:1-469) 20 30 40 50 60 70 bm0294 QGQQECLCVFAVNLLGLGEAVWTKQVRSVAMFSEQAAQRAHTLLSPPSANNATFARVPVA ::::::::::::::.::::.:::::::::: gi|130 MFSEQAAQRAHTLLAPPSASNATFARVPVA 10 20 30 80 90 100 110 120 130 bm0294 TYTNSSQPFRLGERSFSRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQPEEK ::::::::::::::::.:::::::::::::::::: .:::::::: : ::::::::: :. gi|130 TYTNSSQPFRLGERSFNRQYAHIYATRLIQMRPFLVSRAQQHWGSRVEVKKLCELQPGEQ 40 50 60 70 80 90 140 150 160 170 180 190 bm0294 CCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKGTIDV ::::::::::: ::::::::.::::::.:::::::::::::::::::::::::::::::: gi|130 CCVVGTLFKAMSLQPSILREISEEHNLVPQPPRSKYIHPDDELVLEDELQRIKLKGTIDV 100 110 120 130 140 150 200 210 220 230 240 250 bm0294 SKLVTGTVLAVFGSVRDDGKFLVEDYCFADLAPQKPAPPLDTDRFVLLVSGLGLGGGGGE :::::::::::.::..:::.: :::.::::::::::.::::::::::::::::::::::: gi|130 SKLVTGTVLAVLGSAKDDGRFQVEDHCFADLAPQKPVPPLDTDRFVLLVSGLGLGGGGGE 160 170 180 190 200 210 260 270 280 290 300 310 bm0294 SLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLTKKTQA ::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::: gi|130 SLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHNTQSRDSINKAKYLTKKTQA 220 230 240 250 260 270 320 330 340 350 360 370 bm0294 ASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLVTN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|130 ASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLVTN 280 290 300 310 320 330 380 390 400 410 420 430 bm0294 PYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPFYKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|130 PYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPFYKT 340 350 360 370 380 390 440 450 460 470 480 490 bm0294 DPFIFPECPHVYFCGNTPSFGSKIIRGPEDQTVLLVTVPDFSATQTACLVNLRSLACQPI :::::::::::::::::::::::::::::::.::::.:::::.::::::::::::::::: gi|130 DPFIFPECPHVYFCGNTPSFGSKIIRGPEDQVVLLVAVPDFSSTQTACLVNLRSLACQPI 400 410 420 430 440 450 500 510 bm0294 SFSGFGAEDDDLGGLGLGP ::.:::::..:: :::::: gi|130 SFAGFGAEQEDLEGLGLGP 460 >>gi|3913507|sp|O35654.1|DPOD2_MOUSE DNA polymerase subu (469 aa) initn: 2980 init1: 2980 opt: 2980 Z-score: 3594.2 bits: 674.5 E(): 1.5e-191 Smith-Waterman score: 2980; 94.243% identity (98.507% similar) in 469 aa overlap (42-510:1-469) 20 30 40 50 60 70 bm0294 QGQQECLCVFAVNLLGLGEAVWTKQVRSVAMFSEQAAQRAHTLLSPPSANNATFARVPVA ::::::::::::::.::::.:::::::::: gi|391 MFSEQAAQRAHTLLAPPSASNATFARVPVA 10 20 30 80 90 100 110 120 130 bm0294 TYTNSSQPFRLGERSFSRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQPEEK ::::::::::::::::.:::::::::::::::::: .:::::::: : ::::::::: :. gi|391 TYTNSSQPFRLGERSFNRQYAHIYATRLIQMRPFLVTRAQQHWGSRVEVKKLCELQPGEQ 40 50 60 70 80 90 140 150 160 170 180 190 bm0294 CCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKGTIDV ::::::::::: ::::::::.::::::.:::::::::::::::::::::::::::::::: gi|391 CCVVGTLFKAMSLQPSILREISEEHNLVPQPPRSKYIHPDDELVLEDELQRIKLKGTIDV 100 110 120 130 140 150 200 210 220 230 240 250 bm0294 SKLVTGTVLAVFGSVRDDGKFLVEDYCFADLAPQKPAPPLDTDRFVLLVSGLGLGGGGGE :::::::::::.::..:::.: :::.::::::::::.::::::::::::::::::::::: gi|391 SKLVTGTVLAVLGSAKDDGRFQVEDHCFADLAPQKPVPPLDTDRFVLLVSGLGLGGGGGE 160 170 180 190 200 210 260 270 280 290 300 310 bm0294 SLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLTKKTQA ::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::: gi|391 SLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHNTQSRDSINKAKYLTKKTQA 220 230 240 250 260 270 320 330 340 350 360 370 bm0294 ASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLVTN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|391 ASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLVTN 280 290 300 310 320 330 380 390 400 410 420 430 bm0294 PYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPFYKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|391 PYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPFYKT 340 350 360 370 380 390 440 450 460 470 480 490 bm0294 DPFIFPECPHVYFCGNTPSFGSKIIRGPEDQTVLLVTVPDFSATQTACLVNLRSLACQPI :::::::::::::::::::::::::::::::.::::.:::::.::::::::::::::::: gi|391 DPFIFPECPHVYFCGNTPSFGSKIIRGPEDQVVLLVAVPDFSSTQTACLVNLRSLACQPI 400 410 420 430 440 450 500 510 bm0294 SFSGFGAEDDDLGGLGLGP ::.:::::..:: :::::: gi|391 SFAGFGAEQEDLEGLGLGP 460 >>gi|81884493|sp|Q6AXY4.1|DPOD2_RAT DNA polymerase subun (469 aa) initn: 2978 init1: 2978 opt: 2978 Z-score: 3591.8 bits: 674.1 E(): 2e-191 Smith-Waterman score: 2978; 94.030% identity (98.294% similar) in 469 aa overlap (42-510:1-469) 20 30 40 50 60 70 bm0294 QGQQECLCVFAVNLLGLGEAVWTKQVRSVAMFSEQAAQRAHTLLSPPSANNATFARVPVA :::::::::::::::::::.:::::::::: gi|818 MFSEQAAQRAHTLLSPPSASNATFARVPVA 10 20 30 80 90 100 110 120 130 bm0294 TYTNSSQPFRLGERSFSRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQPEEK ::::::::::::::::.:::::::::::::::::: .:::::::: : ::::::::: :. gi|818 TYTNSSQPFRLGERSFNRQYAHIYATRLIQMRPFLVSRAQQHWGSQVEVKKLCELQPGEQ 40 50 60 70 80 90 140 150 160 170 180 190 bm0294 CCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKGTIDV ::::::::::::::::::::.::::::.:::::::::::::::::::::::::::::::: gi|818 CCVVGTLFKAMPLQPSILREISEEHNLIPQPPRSKYIHPDDELVLEDELQRIKLKGTIDV 100 110 120 130 140 150 200 210 220 230 240 250 bm0294 SKLVTGTVLAVFGSVRDDGKFLVEDYCFADLAPQKPAPPLDTDRFVLLVSGLGLGGGGGE :::::::::::::::.::::: :::.::::::::.:.::::::::::::::::::::::: gi|818 SKLVTGTVLAVFGSVKDDGKFQVEDHCFADLAPQNPVPPLDTDRFVLLVSGLGLGGGGGE 160 170 180 190 200 210 260 270 280 290 300 310 bm0294 SLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLTKKTQA ::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::: gi|818 SLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHNTQSRDSINKAKYLTKKTQA 220 230 240 250 260 270 320 330 340 350 360 370 bm0294 ASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLVTN ::::::::::::::::::::::::::::::::::::::::::::::::::::.::::::: gi|818 ASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYATLQLVTN 280 290 300 310 320 330 380 390 400 410 420 430 bm0294 PYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPFYKT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|818 PYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPFYKT 340 350 360 370 380 390 440 450 460 470 480 490 bm0294 DPFIFPECPHVYFCGNTPSFGSKIIRGPEDQTVLLVTVPDFSATQTACLVNLRSLACQPI ::::: :::::::::::::::::.:::::::.::::.:::::.::::::::::.:.:::: gi|818 DPFIFAECPHVYFCGNTPSFGSKVIRGPEDQAVLLVAVPDFSSTQTACLVNLRGLTCQPI 400 410 420 430 440 450 500 510 bm0294 SFSGFGAEDDDLGGLGLGP ::.:::::.::: ::::: gi|818 SFAGFGAEQDDLEDLGLGP 460 >>gi|1008460|gb|AAC48475.1| DNA polymerase delta small s (469 aa) initn: 2971 init1: 2971 opt: 2971 Z-score: 3583.4 bits: 672.5 E(): 5.9e-191 Smith-Waterman score: 2971; 94.670% identity (98.294% similar) in 469 aa overlap (42-510:1-469) 20 30 40 50 60 70 bm0294 QGQQECLCVFAVNLLGLGEAVWTKQVRSVAMFSEQAAQRAHTLLSPPSANNATFARVPVA :::::::::::::::::::.:::::::::. gi|100 MFSEQAAQRAHTLLSPPSASNATFARVPVV 10 20 30 80 90 100 110 120 130 bm0294 TYTNSSQPFRLGERSFSRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQPEEK ::::::::::::::.::::::::::::.::::::: .::::.::::: ::::::::: :: gi|100 TYTNSSQPFRLGERTFSRQYAHIYATRFIQMRPFLVSRAQQRWGSGVLVKKLCELQPGEK 40 50 60 70 80 90 140 150 160 170 180 190 bm0294 CCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKGTIDV :::::::::::::::::::::::::::::::::::::::::::.::::::::::.::::: gi|100 CCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELILEDELQRIKLEGTIDV 100 110 120 130 140 150 200 210 220 230 240 250 bm0294 SKLVTGTVLAVFGSVRDDGKFLVEDYCFADLAPQKPAPPLDTDRFVLLVSGLGLGGGGGE :::::::::::.::. :::::::::.::: ::::::: :::::::::::::::::::::: gi|100 SKLVTGTVLAVLGSAGDDGKFLVEDHCFAGLAPQKPACPLDTDRFVLLVSGLGLGGGGGE 160 170 180 190 200 210 260 270 280 290 300 310 bm0294 SLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLTKKTQA ::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::: gi|100 SLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHNTQSRDSINKAKYLTKKTQA 220 230 240 250 260 270 320 330 340 350 360 370 bm0294 ASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLVTN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|100 ASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLVTN 280 290 300 310 320 330 380 390 400 410 420 430 bm0294 PYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPFYKT :::::::::::::::::::::::::::::::::::::::.:::::::::::::::: ::: gi|100 PYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLQVRHISPTAPDTLGCYPSYKT 340 350 360 370 380 390 440 450 460 470 480 490 bm0294 DPFIFPECPHVYFCGNTPSFGSKIIRGPEDQTVLLVTVPDFSATQTACLVNLRSLACQPI :::::::::::::::::::::::::.::::::::::.:::::.::::::::: ::::::: gi|100 DPFIFPECPHVYFCGNTPSFGSKIIQGPEDQTVLLVAVPDFSTTQTACLVNLGSLACQPI 400 410 420 430 440 450 500 510 bm0294 SFSGFGAEDDDLGGLGLGP :::::::::.::::::::: gi|100 SFSGFGAEDEDLGGLGLGP 460 >>gi|74010360|ref|XP_539802.2| PREDICTED: similar to DNA (469 aa) initn: 2997 init1: 2970 opt: 2970 Z-score: 3582.2 bits: 672.3 E(): 6.9e-191 Smith-Waterman score: 2970; 93.177% identity (98.721% similar) in 469 aa overlap (42-510:1-469) 20 30 40 50 60 70 bm0294 QGQQECLCVFAVNLLGLGEAVWTKQVRSVAMFSEQAAQRAHTLLSPPSANNATFARVPVA :::::::::::::::::::.:::::::::. gi|740 MFSEQAAQRAHTLLSPPSASNATFARVPVS 10 20 30 80 90 100 110 120 130 bm0294 TYTNSSQPFRLGERSFSRQYAHIYATRLIQMRPFLENRAQQHWGSGVGVKKLCELQPEEK ::::::: ::::::::::::::::::::.:::::: .:::::::.:. .:::::::: :: gi|740 TYTNSSQSFRLGERSFSRQYAHIYATRLLQMRPFLVSRAQQHWGDGIQIKKLCELQPGEK 40 50 60 70 80 90 140 150 160 170 180 190 bm0294 CCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDELQRIKLKGTIDV ::::::::::::::::::::.::::::::::::::::::::.::::::::::::.:.::. gi|740 CCVVGTLFKAMPLQPSILREISEEHNLLPQPPRSKYIHPDDQLVLEDELQRIKLEGSIDA 100 110 120 130 140 150 200 210 220 230 240 250 bm0294 SKLVTGTVLAVFGSVRDDGKFLVEDYCFADLAPQKPAPPLDTDRFVLLVSGLGLGGGGGE :::::::::::.:::::.:::::::.:::.:::::::: ::::::::::::::::::::: gi|740 SKLVTGTVLAVLGSVRDSGKFLVEDHCFAELAPQKPAPTLDTDRFVLLVSGLGLGGGGGE 160 170 180 190 200 210 260 270 280 290 300 310 bm0294 SLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHSTQSRDSINKAKYLTKKTQA ::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::: gi|740 SLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVILAGNLLSHNTQSRDSINKAKYLTKKTQA 220 230 240 250 260 270 320 330 340 350 360 370 bm0294 ASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLVTN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|740 ASVEAVKMLDEILLQLSASVPVDVMPGEFDPTNYTLPQQPLHPCMFPLATAYSTLQLVTN 280 290 300 310 320 330 380 390 400 410 420 430 bm0294 PYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRVRHISPTAPDTLGCYPFYKT ::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::. gi|740 PYQATIDGVRFLGTSGQNVSDIFRYSSMEDHLEILEWTLRIRHISPTAPDTLGCYPFYKN 340 350 360 370 380 390 440 450 460 470 480 490 bm0294 DPFIFPECPHVYFCGNTPSFGSKIIRGPEDQTVLLVTVPDFSATQTACLVNLRSLACQPI ::::::.:::::::::::.:::::.:::::: ::::.:::::.::::::::::::::::: gi|740 DPFIFPDCPHVYFCGNTPQFGSKIFRGPEDQRVLLVAVPDFSTTQTACLVNLRSLACQPI 400 410 420 430 440 450 500 510 bm0294 SFSGFGAEDDDLGGLGLGP :::::::::.:::::::.: gi|740 SFSGFGAEDEDLGGLGLSP 460 510 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Thu Aug 7 14:39:09 2008 done: Thu Aug 7 14:41:37 2008 Total Scan time: 896.090 Total Display time: 0.150 Function used was FASTA [version 34.26.5 April 26, 2007]