hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-14413813/chunk_1/iprscan-20080807-14413813.nocrc
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Query sequence: bm02949
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF04042.6.fs DNA polymerase alpha/epsilon subunit B      314.8    2.4e-94   1
PF04042.6.ls DNA polymerase alpha/epsilon subunit B      316.7    3.9e-92   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF04042.6.fs   1/1     237   453 ..     1   250 []   314.8  2.4e-94
PF04042.6.ls   1/1     237   453 ..     1   250 []   316.7  3.9e-92

Alignments of top-scoring domains:
PF04042.6.fs: domain 1 of 1, from 237 to 453: score 314.8, E = 2.4e-94
                   *->ivfvSGlyldsdnks.ieglelLrdlLsgvnGdegeqseaappdrli
                      +++vSGl+l+++   +++g +lL+d+++g++Gdegeq++aa+++r+i
     bm02949   237    VLLVSGLGLGGGGGEsLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVI 283  

                   laGpFldakhkliassavavtltakdnstenfvflkeldgileqllvgss
                   laG++l++++++++s ++a++lt+k +++ +++++k+ld+il ql   +s
     bm02949   284 LAGNLLSHSTQSRDSINKAKYLTKK-TQAASVEAVKMLDEILLQLS--AS 330  

                   tpvilvPGpnDpanshtiLPQqPfprclfpkskkynpnlqfvtNPcrfsi
                   +pv+++PG++Dp+n+  +LPQqP+++c+fp++  y++ lq+vtNP++  i
     bm02949   331 VPVDVMPGEFDPTNY--TLPQQPLHPCMFPLATAYST-LQLVTNPYQATI 377  

                   ngvevvvtsgDnvkdllryslkfssspmelenppleedvdrllrlvetiL
                   +gv++++tsg+nv+d++rys+++++                 l+++e++L
     bm02949   378 DGVRFLGTSGQNVSDIFRYSSMEDH-----------------LEILEWTL 410  

                   rQrhlaPlaPParklpsDtlgpypydkddpfvlldpnlPdvyivgstklp
                   r+rh++P+aP       Dtlg+yp++k dpf++  + +P+vy++g+  +p
     bm02949   411 RVRHISPTAP-------DTLGCYPFYKTDPFIF-PE-CPHVYFCGN--TP 449  

                   pFvk<-*
                   +F+    
     bm02949   450 SFGS    453  

PF04042.6.ls: domain 1 of 1, from 237 to 453: score 316.7, E = 3.9e-92
                   *->ivfvSGlyldsdnks.ieglelLrdlLsgvnGdegeqseaappdrli
                      +++vSGl+l+++   +++g +lL+d+++g++Gdegeq++aa+++r+i
     bm02949   237    VLLVSGLGLGGGGGEsLLGTQLLVDVVTGQLGDEGEQCSAAHVSRVI 283  

                   laGpFldakhkliassavavtltakdnstenfvflkeldgileqllvgss
                   laG++l++++++++s ++a++lt+k +++ +++++k+ld+il ql   +s
     bm02949   284 LAGNLLSHSTQSRDSINKAKYLTKK-TQAASVEAVKMLDEILLQLS--AS 330  

                   tpvilvPGpnDpanshtiLPQqPfprclfpkskkynpnlqfvtNPcrfsi
                   +pv+++PG++Dp+n+  +LPQqP+++c+fp++  y++ lq+vtNP++  i
     bm02949   331 VPVDVMPGEFDPTNY--TLPQQPLHPCMFPLATAYST-LQLVTNPYQATI 377  

                   ngvevvvtsgDnvkdllryslkfssspmelenppleedvdrllrlvetiL
                   +gv++++tsg+nv+d++rys+++++                 l+++e++L
     bm02949   378 DGVRFLGTSGQNVSDIFRYSSMEDH-----------------LEILEWTL 410  

                   rQrhlaPlaPParklpsDtlgpypydkddpfvlldpnlPdvyivgstklp
                   r+rh++P+aP       Dtlg+yp++k dpf++  + +P+vy++g+  +p
     bm02949   411 RVRHISPTAP-------DTLGCYPFYKTDPFIF-PE-CPHVYFCGN--TP 449  

                   pFvk<-*
                   +F+    
     bm02949   450 SFGS    453  

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