hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-14474236/chunk_1/iprscan-20080807-14474236.nocrc
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Query sequence: bm02973
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00320                                                  71.3    1.2e-16   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00320    1/3      80   120 ..     1    46 []    22.8    0.047
SM00320    2/3     123   162 ..     1    46 []    38.6  8.3e-07
SM00320    3/3     165   202 ..     1    46 []     9.8       14

Alignments of top-scoring domains:
SM00320: domain 1 of 3, from 80 to 120: score 22.8, E = 0.047
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++    t+  H++  +V +v+ +p       ++l ++g++D +  +W
     bm02973    80    PdDSEVTFALHSA--SVFCVSLDPKT-----NTLAVTGGeDDKAFVW 119  

                   d<-*
                       
     bm02973   120 R    120  

SM00320: domain 2 of 3, from 123 to 162: score 38.6, E = 8.3e-07
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +++ll+++ gH++  +Vt+  fs+d+      +l+a+g+  g +++W
     bm02973   123    DgELLFECAGHKD--SVTCAGFSHDS------TLVATGDmSGLLKVW 161  

                   d<-*
                       
     bm02973   162 Q    162  

SM00320: domain 3 of 3, from 165 to 202: score 9.8, E = 14
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t++ + +++   g  +   + ++p         +l++g  Dg+  +W
     bm02973   165    TkEEVWSFE--AG--DLEWMEWHPRA------PVLLAGTaDGNTWMW 201  

                   d<-*
                   +   
     bm02973   202 K    202  

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