# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Obm03010.fasta.nr -Q bm03010.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 bm03010, 493 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6804541 sequences Expectation_n fit: rho(ln(x))= 6.9085+/-0.000213; mu= 5.0648+/- 0.012 mean_var=154.1568+/-29.555, 0's: 44 Z-trim: 91 B-trim: 0 in 0/65 Lambda= 0.103298 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|74761247|sp|Q9BTD8.1|RBM42_HUMAN RNA-binding pr ( 480) 3272 499.2 8.6e-139 gi|109124372|ref|XP_001096199.1| PREDICTED: simila ( 480) 3264 498.0 2e-138 gi|55649061|ref|XP_524226.1| PREDICTED: similar to ( 473) 3210 489.9 5.2e-136 gi|109124370|ref|XP_001096086.1| PREDICTED: simila ( 473) 3202 488.8 1.2e-135 gi|149721860|ref|XP_001492287.1| PREDICTED: simila ( 474) 3189 486.8 4.5e-135 gi|73947895|ref|XP_853696.1| PREDICTED: similar to ( 475) 3175 484.7 1.9e-134 gi|148692054|gb|EDL24001.1| RIKEN cDNA 3100004P22 ( 490) 3168 483.7 4.1e-134 gi|149056297|gb|EDM07728.1| similar to RIKEN cDNA ( 478) 3165 483.2 5.4e-134 gi|81910848|sp|Q6AXT7.1|RBM42_RAT RNA-binding prot ( 474) 3159 482.3 1e-133 gi|81916071|sp|Q91V81.1|RBM42_MOUSE RNA-binding pr ( 474) 3154 481.6 1.7e-133 gi|74181511|dbj|BAE30024.1| unnamed protein produc ( 478) 3147 480.6 3.5e-133 gi|73947897|ref|XP_867805.1| PREDICTED: similar to ( 468) 2820 431.8 1.6e-118 gi|73947901|ref|XP_867820.1| PREDICTED: similar to ( 430) 2645 405.7 1.1e-110 gi|114676752|ref|XP_001160314.1| PREDICTED: simila ( 455) 2643 405.4 1.4e-110 gi|2098575|gb|AAB57629.1| F25451_2 [Homo sapiens] ( 339) 2320 357.2 3.4e-96 gi|126329155|ref|XP_001363785.1| PREDICTED: hypoth ( 478) 2288 352.5 1.2e-94 gi|149721864|ref|XP_001492395.1| PREDICTED: hypoth ( 452) 2163 333.9 4.7e-89 gi|114676750|ref|XP_001160412.1| PREDICTED: simila ( 458) 2162 333.8 5.2e-89 gi|109124376|ref|XP_001095981.1| PREDICTED: simila ( 458) 2154 332.6 1.2e-88 gi|73947899|ref|XP_867813.1| PREDICTED: similar to ( 453) 2142 330.8 4.1e-88 gi|12804031|gb|AAH02868.1| RBM42 protein [Homo sap ( 451) 2121 327.6 3.6e-87 gi|149721862|ref|XP_001492304.1| PREDICTED: simila ( 445) 2118 327.2 4.8e-87 gi|109124374|ref|XP_001096319.1| PREDICTED: simila ( 451) 2113 326.4 8.2e-87 gi|21594922|gb|AAH31682.1| RBM42 protein [Homo sap ( 450) 2111 326.1 1e-86 gi|114676754|ref|XP_001160361.1| PREDICTED: simila ( 426) 2108 325.7 1.3e-86 gi|122144265|sp|Q0P5L0.1|RBM42_BOVIN RNA-binding p ( 448) 2106 325.4 1.7e-86 gi|109124378|ref|XP_001095872.1| PREDICTED: simila ( 426) 2100 324.5 3e-86 gi|73947903|ref|XP_867831.1| PREDICTED: similar to ( 446) 2100 324.5 3.1e-86 gi|149721866|ref|XP_001492357.1| PREDICTED: hypoth ( 420) 2085 322.2 1.4e-85 gi|126331573|ref|XP_001365764.1| PREDICTED: hypoth ( 493) 1824 283.4 8e-74 gi|119889904|ref|XP_594269.3| PREDICTED: hypotheti ( 258) 1019 163.2 6.6e-38 gi|49619063|gb|AAT68116.1| MGC10433-like [Danio re ( 402) 997 160.1 8.7e-37 gi|160017962|sp|Q6DRG1.2|RBM42_DANRE RNA-binding p ( 402) 994 159.6 1.2e-36 gi|160016109|sp|A2VDB3.1|RBM42_XENLA RNA-binding p ( 392) 970 156.0 1.4e-35 gi|82234503|sp|Q66KL9.1|RBM42_XENTR RNA-binding pr ( 392) 969 155.9 1.5e-35 gi|120537888|gb|AAI29577.1| LOC100036875 protein [ ( 385) 897 145.2 2.6e-32 gi|115625792|ref|XP_784687.2| PREDICTED: similar t ( 425) 743 122.3 2.3e-25 gi|66501574|ref|XP_392161.2| PREDICTED: similar to ( 326) 683 113.2 9.2e-23 gi|76155203|gb|AAX26456.2| SJCHGC03253 protein [Sc ( 158) 677 112.0 1e-22 gi|157014281|gb|EAL39296.3| AGAP010200-PA [Anophel ( 323) 668 111.0 4.3e-22 gi|108873128|gb|EAT37353.1| poly(A)-binding protei ( 326) 664 110.4 6.5e-22 gi|156219102|gb|EDO39989.1| predicted protein [Nem ( 126) 657 108.9 6.8e-22 gi|7332094|gb|AAF60781.1| Temporarily assigned gen ( 302) 653 108.7 1.9e-21 gi|187022725|emb|CAP38152.1| C. briggsae CBR-TAG-2 ( 291) 650 108.2 2.6e-21 gi|194169881|gb|EDW84782.1| GK12952 [Drosophila wi ( 302) 636 106.2 1.1e-20 gi|190619756|gb|EDV35280.1| GF11626 [Drosophila an ( 310) 634 105.9 1.4e-20 gi|193899777|gb|EDV98643.1| GH22277 [Drosophila gr ( 300) 632 105.6 1.7e-20 gi|194152710|gb|EDW68144.1| GJ22705 [Drosophila vi ( 302) 632 105.6 1.7e-20 gi|54639090|gb|EAL28492.1| GA15528-PA [Drosophila ( 302) 632 105.6 1.7e-20 gi|194112212|gb|EDW34255.1| GL22151 [Drosophila pe ( 303) 632 105.6 1.7e-20 >>gi|74761247|sp|Q9BTD8.1|RBM42_HUMAN RNA-binding protei (480 aa) initn: 3272 init1: 3272 opt: 3272 Z-score: 2646.9 bits: 499.2 E(): 8.6e-139 Smith-Waterman score: 3272; 100.000% identity (100.000% similar) in 480 aa overlap (14-493:1-480) 10 20 30 40 50 60 bm0301 AETVVAATATTAAMAGAGPAPGLPGAGGPVVPGPGAGIPGKSGEERLKEMEAEMALFEQE ::::::::::::::::::::::::::::::::::::::::::::::: gi|747 MAGAGPAPGLPGAGGPVVPGPGAGIPGKSGEERLKEMEAEMALFEQE 10 20 30 40 70 80 90 100 110 120 bm0301 VLGAPVPGIPTAVPAVPTVPTVPTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 VLGAPVPGIPTAVPAVPTVPTVPTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAA 50 60 70 80 90 100 130 140 150 160 170 180 bm0301 TVVPPMVGGPPFVGPVGFGPGDRSHLDSPEAREAMFLRRAAVAPQRAPILRPAFVPHVLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 TVVPPMVGGPPFVGPVGFGPGDRSHLDSPEAREAMFLRRAAVAPQRAPILRPAFVPHVLQ 110 120 130 140 150 160 190 200 210 220 230 240 bm0301 RADSALSSAAAGPRPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAALRPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 RADSALSSAAAGPRPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAALRPP 170 180 190 200 210 220 250 260 270 280 290 300 bm0301 LEEPAAPRELGLGLGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIGPSLPLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 LEEPAAPRELGLGLGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIGPSLPLA 230 240 250 260 270 280 310 320 330 340 350 360 bm0301 LAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRPRPPRPEPPPGLMALEVPEPLGED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 LAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRPRPPRPEPPPGLMALEVPEPLGED 290 300 310 320 330 340 370 380 390 400 410 420 bm0301 KKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 KKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSF 350 360 370 380 390 400 430 440 450 460 470 480 bm0301 LKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNLDVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 LKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNLDVV 410 420 430 440 450 460 490 bm0301 RKKQKEKKKLGLR ::::::::::::: gi|747 RKKQKEKKKLGLR 470 480 >>gi|109124372|ref|XP_001096199.1| PREDICTED: similar to (480 aa) initn: 3264 init1: 3264 opt: 3264 Z-score: 2640.4 bits: 498.0 E(): 2e-138 Smith-Waterman score: 3264; 99.792% identity (100.000% similar) in 480 aa overlap (14-493:1-480) 10 20 30 40 50 60 bm0301 AETVVAATATTAAMAGAGPAPGLPGAGGPVVPGPGAGIPGKSGEERLKEMEAEMALFEQE ::::::::::::::::::::::::::::::::::::::::::::::: gi|109 MAGAGPAPGLPGAGGPVVPGPGAGIPGKSGEERLKEMEAEMALFEQE 10 20 30 40 70 80 90 100 110 120 bm0301 VLGAPVPGIPTAVPAVPTVPTVPTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 VLGAPVPGIPTAVPAVPTVPTVPTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAA 50 60 70 80 90 100 130 140 150 160 170 180 bm0301 TVVPPMVGGPPFVGPVGFGPGDRSHLDSPEAREAMFLRRAAVAPQRAPILRPAFVPHVLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 TVVPPMVGGPPFVGPVGFGPGDRSHLDSPEAREAMFLRRAAVAPQRAPILRPAFVPHVLQ 110 120 130 140 150 160 190 200 210 220 230 240 bm0301 RADSALSSAAAGPRPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAALRPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 RADSALSSAAAGPRPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAALRPP 170 180 190 200 210 220 250 260 270 280 290 300 bm0301 LEEPAAPRELGLGLGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIGPSLPLA ::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::: gi|109 LEEPAAPRELGLGLGLGLKEKEEAVVAAAAGLEEASAAVAVGAGAAPAGPAVIGPSLPLA 230 240 250 260 270 280 310 320 330 340 350 360 bm0301 LAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRPRPPRPEPPPGLMALEVPEPLGED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 LAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRPRPPRPEPPPGLMALEVPEPLGED 290 300 310 320 330 340 370 380 390 400 410 420 bm0301 KKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 KKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSF 350 360 370 380 390 400 430 440 450 460 470 480 bm0301 LKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNLDVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 LKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNLDVV 410 420 430 440 450 460 490 bm0301 RKKQKEKKKLGLR ::::::::::::: gi|109 RKKQKEKKKLGLR 470 480 >>gi|55649061|ref|XP_524226.1| PREDICTED: similar to MGC (473 aa) initn: 2104 init1: 2104 opt: 3210 Z-score: 2597.0 bits: 489.9 E(): 5.2e-136 Smith-Waterman score: 3210; 98.542% identity (98.542% similar) in 480 aa overlap (14-493:1-473) 10 20 30 40 50 60 bm0301 AETVVAATATTAAMAGAGPAPGLPGAGGPVVPGPGAGIPGKSGEERLKEMEAEMALFEQE ::::::::::::::::::::::::::::::::::::::::::::::: gi|556 MAGAGPAPGLPGAGGPVVPGPGAGIPGKSGEERLKEMEAEMALFEQE 10 20 30 40 70 80 90 100 110 120 bm0301 VLGAPVPGIPTAVPAVPTVPTVPTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|556 VLGAPVPGIPTAVPAVPTVPTVPTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAA 50 60 70 80 90 100 130 140 150 160 170 180 bm0301 TVVPPMVGGPPFVGPVGFGPGDRSHLDSPEAREAMFLRRAAVAPQRAPILRPAFVPHVLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|556 TVVPPMVGGPPFVGPVGFGPGDRSHLDSPEAREAMFLRRAAVAPQRAPILRPAFVPHVLQ 110 120 130 140 150 160 190 200 210 220 230 240 bm0301 RADSALSSAAAGPRPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAALRPP :: ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|556 RA-------AAGPRPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAALRPP 170 180 190 200 210 220 250 260 270 280 290 300 bm0301 LEEPAAPRELGLGLGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIGPSLPLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|556 LEEPAAPRELGLGLGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIGPSLPLA 230 240 250 260 270 280 310 320 330 340 350 360 bm0301 LAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRPRPPRPEPPPGLMALEVPEPLGED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|556 LAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRPRPPRPEPPPGLMALEVPEPLGED 290 300 310 320 330 340 370 380 390 400 410 420 bm0301 KKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|556 KKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSF 350 360 370 380 390 400 430 440 450 460 470 480 bm0301 LKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNLDVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|556 LKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNLDVV 410 420 430 440 450 460 490 bm0301 RKKQKEKKKLGLR ::::::::::::: gi|556 RKKQKEKKKLGLR 470 >>gi|109124370|ref|XP_001096086.1| PREDICTED: similar to (473 aa) initn: 2096 init1: 2096 opt: 3202 Z-score: 2590.6 bits: 488.8 E(): 1.2e-135 Smith-Waterman score: 3202; 98.333% identity (98.542% similar) in 480 aa overlap (14-493:1-473) 10 20 30 40 50 60 bm0301 AETVVAATATTAAMAGAGPAPGLPGAGGPVVPGPGAGIPGKSGEERLKEMEAEMALFEQE ::::::::::::::::::::::::::::::::::::::::::::::: gi|109 MAGAGPAPGLPGAGGPVVPGPGAGIPGKSGEERLKEMEAEMALFEQE 10 20 30 40 70 80 90 100 110 120 bm0301 VLGAPVPGIPTAVPAVPTVPTVPTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 VLGAPVPGIPTAVPAVPTVPTVPTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAA 50 60 70 80 90 100 130 140 150 160 170 180 bm0301 TVVPPMVGGPPFVGPVGFGPGDRSHLDSPEAREAMFLRRAAVAPQRAPILRPAFVPHVLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 TVVPPMVGGPPFVGPVGFGPGDRSHLDSPEAREAMFLRRAAVAPQRAPILRPAFVPHVLQ 110 120 130 140 150 160 190 200 210 220 230 240 bm0301 RADSALSSAAAGPRPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAALRPP :: ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 RA-------AAGPRPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAALRPP 170 180 190 200 210 220 250 260 270 280 290 300 bm0301 LEEPAAPRELGLGLGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIGPSLPLA ::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::: gi|109 LEEPAAPRELGLGLGLGLKEKEEAVVAAAAGLEEASAAVAVGAGAAPAGPAVIGPSLPLA 230 240 250 260 270 280 310 320 330 340 350 360 bm0301 LAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRPRPPRPEPPPGLMALEVPEPLGED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 LAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRPRPPRPEPPPGLMALEVPEPLGED 290 300 310 320 330 340 370 380 390 400 410 420 bm0301 KKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 KKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSF 350 360 370 380 390 400 430 440 450 460 470 480 bm0301 LKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNLDVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 LKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNLDVV 410 420 430 440 450 460 490 bm0301 RKKQKEKKKLGLR ::::::::::::: gi|109 RKKQKEKKKLGLR 470 >>gi|149721860|ref|XP_001492287.1| PREDICTED: similar to (474 aa) initn: 2816 init1: 2816 opt: 3189 Z-score: 2580.1 bits: 486.8 E(): 4.5e-135 Smith-Waterman score: 3189; 98.125% identity (98.542% similar) in 480 aa overlap (14-493:1-474) 10 20 30 40 50 60 bm0301 AETVVAATATTAAMAGAGPAPGLPGAGGPVVPGPGAGIPGKSGEERLKEMEAEMALFEQE ::::::::::::::::::::::::::::::::::::::::::::::: gi|149 MAGAGPAPGLPGAGGPVVPGPGAGIPGKSGEERLKEMEAEMALFEQE 10 20 30 40 70 80 90 100 110 120 bm0301 VLGAPVPGIPTAVPAVPTVPTVPTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAA :::::: ::::::: :::::::::::::::::::::::::::::::::::::::: gi|149 VLGAPVTGIPTAVP------TVPTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAA 50 60 70 80 90 100 130 140 150 160 170 180 bm0301 TVVPPMVGGPPFVGPVGFGPGDRSHLDSPEAREAMFLRRAAVAPQRAPILRPAFVPHVLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 TVVPPMVGGPPFVGPVGFGPGDRSHLDSPEAREAMFLRRAAVAPQRAPILRPAFVPHVLQ 110 120 130 140 150 160 190 200 210 220 230 240 bm0301 RADSALSSAAAGPRPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAALRPP ::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 RADSALSSAAGGPRPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAALRPP 170 180 190 200 210 220 250 260 270 280 290 300 bm0301 LEEPAAPRELGLGLGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIGPSLPLA :::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 LEEPATPRELGLGLGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIGPSLPLA 230 240 250 260 270 280 310 320 330 340 350 360 bm0301 LAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRPRPPRPEPPPGLMALEVPEPLGED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 LAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRPRPPRPEPPPGLMALEVPEPLGED 290 300 310 320 330 340 370 380 390 400 410 420 bm0301 KKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 KKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSF 350 360 370 380 390 400 430 440 450 460 470 480 bm0301 LKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNLDVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 LKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNLDVV 410 420 430 440 450 460 490 bm0301 RKKQKEKKKLGLR ::::::::::::: gi|149 RKKQKEKKKLGLR 470 >>gi|73947895|ref|XP_853696.1| PREDICTED: similar to Tem (475 aa) initn: 2972 init1: 2831 opt: 3175 Z-score: 2568.8 bits: 484.7 E(): 1.9e-134 Smith-Waterman score: 3175; 97.917% identity (98.750% similar) in 480 aa overlap (14-493:1-475) 10 20 30 40 50 60 bm0301 AETVVAATATTAAMAGAGPAPGLPGAGGPVVPGPGAGIPGKSGEERLKEMEAEMALFEQE :::::::::::::::::::: ::.:::::::::::::::::::::: gi|739 MAGAGPAPGLPGAGGPVVPG--AGMPGKSGEERLKEMEAEMALFEQE 10 20 30 40 70 80 90 100 110 120 bm0301 VLGAPVPGIPTAVPAVPTVPTVPTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAA :::::: :::::::::::::: :::::::::::::::::::::::::::::::::::: gi|739 VLGAPVTGIPTAVPAVPTVPT---VEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAA 50 60 70 80 90 100 130 140 150 160 170 180 bm0301 TVVPPMVGGPPFVGPVGFGPGDRSHLDSPEAREAMFLRRAAVAPQRAPILRPAFVPHVLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 TVVPPMVGGPPFVGPVGFGPGDRSHLDSPEAREAMFLRRAAVAPQRAPILRPAFVPHVLQ 110 120 130 140 150 160 190 200 210 220 230 240 bm0301 RADSALSSAAAGPRPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAALRPP ::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 RADSALSSAAGGPRPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAALRPP 170 180 190 200 210 220 250 260 270 280 290 300 bm0301 LEEPAAPRELGLGLGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIGPSLPLA :::::.:::::::::::::::::::::::::::::::::::::::::.:::::::::::: gi|739 LEEPATPRELGLGLGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPTGPAVIGPSLPLA 230 240 250 260 270 280 310 320 330 340 350 360 bm0301 LAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRPRPPRPEPPPGLMALEVPEPLGED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 LAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRPRPPRPEPPPGLMALEVPEPLGED 290 300 310 320 330 340 370 380 390 400 410 420 bm0301 KKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 KKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSF 350 360 370 380 390 400 430 440 450 460 470 480 bm0301 LKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNLDVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 LKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNLDVV 410 420 430 440 450 460 490 bm0301 RKKQKEKKKLGLR ::::::::::::: gi|739 RKKQKEKKKLGLR 470 >>gi|148692054|gb|EDL24001.1| RIKEN cDNA 3100004P22 [Mus (490 aa) initn: 2793 init1: 2793 opt: 3168 Z-score: 2563.0 bits: 483.7 E(): 4.1e-134 Smith-Waterman score: 3168; 96.107% identity (97.746% similar) in 488 aa overlap (6-493:9-490) 10 20 30 40 50 bm0301 AETVVAATATTAAMAGAGPAPGLPGAGGPVVPGPGAGIPGKSGEERLKEMEAEMALF :. : ..:::::::::::: ::::::::::.::::::::::::::::::::: gi|148 NPLRLLEGAVKAMASAMAGAGPAPGLPVAGGPVVPGPGVGIPGKSGEERLKEMEAEMALF 10 20 30 40 50 60 60 70 80 90 100 110 bm0301 EQEVLGAPVPGIPTAVPAVPTVPTVPTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAA ::::::::: :::::::: :::::::::: ::::::::::::::::::::::::: gi|148 EQEVLGAPVTGIPTAVPA------VPTVEAMQVPPAPVIRPIIATNTYQQVQQTLEARAA 70 80 90 100 110 120 130 140 150 160 170 bm0301 AAATVVPPMVGGPPFVGPVGFGPGDRSHLDSPEAREAMFLRRAAVAPQRAPILRPAFVPH :::::::::::::::::::::::.::.::::::::::::::::::::::::::::::::: gi|148 AAATVVPPMVGGPPFVGPVGFGPADRGHLDSPEAREAMFLRRAAVAPQRAPILRPAFVPH 120 130 140 150 160 170 180 190 200 210 220 230 bm0301 VLQRADSALSSAAAGPRPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAAL :::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::: gi|148 VLQRADSALSSAAGGPRPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAAL 180 190 200 210 220 230 240 250 260 270 280 290 bm0301 RPPLEEPAAPRELGLGLGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIGPSL ::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::: gi|148 RPPLEEPAAPRELGLGLGLGLKDKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIGPSL 240 250 260 270 280 290 300 310 320 330 340 350 bm0301 PLALAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRPRPPRPEPPPGLMALEVPEPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 PLALAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRPRPPRPEPPPGLMALEVPEPL 300 310 320 330 340 350 360 370 380 390 400 410 bm0301 GEDKKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 GEDKKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRF 360 370 380 390 400 410 420 430 440 450 460 470 bm0301 PSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 PSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNL 420 430 440 450 460 470 480 490 bm0301 DVVRKKQKEKKKLGLR :::::::::::::::: gi|148 DVVRKKQKEKKKLGLR 480 490 >>gi|149056297|gb|EDM07728.1| similar to RIKEN cDNA 3100 (478 aa) initn: 2798 init1: 2798 opt: 3165 Z-score: 2560.7 bits: 483.2 E(): 5.4e-134 Smith-Waterman score: 3165; 97.095% identity (98.133% similar) in 482 aa overlap (12-493:3-478) 10 20 30 40 50 60 bm0301 AETVVAATATTAAMAGAGPAPGLPGAGGPVVPGPGAGIPGKSGEERLKEMEAEMALFEQE .:::::::::::: ::::::::::.:::::::::::::::::::::::: gi|149 MASAMAGAGPAPGLPVAGGPVVPGPGVGIPGKSGEERLKEMEAEMALFEQE 10 20 30 40 50 70 80 90 100 110 120 bm0301 VLGAPVPGIPTAVPAVPTVPTVPTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAA :::::: :::::::::::: :::::: :::::::::::::::::::::::::::: gi|149 VLGAPVTGIPTAVPAVPTV------EAMQVPPAPVIRPIIATNTYQQVQQTLEARAAAAA 60 70 80 90 100 130 140 150 160 170 180 bm0301 TVVPPMVGGPPFVGPVGFGPGDRSHLDSPEAREAMFLRRAAVAPQRAPILRPAFVPHVLQ ::::::::::::::::::::.::::::::::::::::::::::::::::::::::::::: gi|149 TVVPPMVGGPPFVGPVGFGPADRSHLDSPEAREAMFLRRAAVAPQRAPILRPAFVPHVLQ 110 120 130 140 150 160 190 200 210 220 230 240 bm0301 RADSALSSAAAGPRPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAALRPP ::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 RADSALSSAAGGPRPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAALRPP 170 180 190 200 210 220 250 260 270 280 290 300 bm0301 LEEPAAPRELGLGLGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIGPSLPLA ::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 LEEPAAPRDLGLGLGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIGPSLPLA 230 240 250 260 270 280 310 320 330 340 350 360 bm0301 LAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRPRPPRPEPPPGLMALEVPEPLGED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 LAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRPRPPRPEPPPGLMALEVPEPLGED 290 300 310 320 330 340 370 380 390 400 410 420 bm0301 KKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 KKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSF 350 360 370 380 390 400 430 440 450 460 470 480 bm0301 LKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNLDVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 LKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNLDVV 410 420 430 440 450 460 490 bm0301 RKKQKEKKKLGLR ::::::::::::: gi|149 RKKQKEKKKLGLR 470 >>gi|81910848|sp|Q6AXT7.1|RBM42_RAT RNA-binding protein (474 aa) initn: 2798 init1: 2798 opt: 3159 Z-score: 2555.9 bits: 482.3 E(): 1e-133 Smith-Waterman score: 3159; 97.292% identity (98.125% similar) in 480 aa overlap (14-493:1-474) 10 20 30 40 50 60 bm0301 AETVVAATATTAAMAGAGPAPGLPGAGGPVVPGPGAGIPGKSGEERLKEMEAEMALFEQE ::::::::::: ::::::::::.:::::::::::::::::::::::: gi|819 MAGAGPAPGLPVAGGPVVPGPGVGIPGKSGEERLKEMEAEMALFEQE 10 20 30 40 70 80 90 100 110 120 bm0301 VLGAPVPGIPTAVPAVPTVPTVPTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAA :::::: :::::::::::: :::::: :::::::::::::::::::::::::::: gi|819 VLGAPVTGIPTAVPAVPTV------EAMQVPPAPVIRPIIATNTYQQVQQTLEARAAAAA 50 60 70 80 90 100 130 140 150 160 170 180 bm0301 TVVPPMVGGPPFVGPVGFGPGDRSHLDSPEAREAMFLRRAAVAPQRAPILRPAFVPHVLQ ::::::::::::::::::::.::::::::::::::::::::::::::::::::::::::: gi|819 TVVPPMVGGPPFVGPVGFGPADRSHLDSPEAREAMFLRRAAVAPQRAPILRPAFVPHVLQ 110 120 130 140 150 160 190 200 210 220 230 240 bm0301 RADSALSSAAAGPRPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAALRPP ::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::: gi|819 RADSALSSAAGGPRPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAALRPP 170 180 190 200 210 220 250 260 270 280 290 300 bm0301 LEEPAAPRELGLGLGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIGPSLPLA ::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::: gi|819 LEEPAAPRDLGLGLGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIGPSLPLA 230 240 250 260 270 280 310 320 330 340 350 360 bm0301 LAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRPRPPRPEPPPGLMALEVPEPLGED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|819 LAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRPRPPRPEPPPGLMALEVPEPLGED 290 300 310 320 330 340 370 380 390 400 410 420 bm0301 KKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|819 KKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSF 350 360 370 380 390 400 430 440 450 460 470 480 bm0301 LKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNLDVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|819 LKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNLDVV 410 420 430 440 450 460 490 bm0301 RKKQKEKKKLGLR ::::::::::::: gi|819 RKKQKEKKKLGLR 470 >>gi|81916071|sp|Q91V81.1|RBM42_MOUSE RNA-binding protei (474 aa) initn: 2793 init1: 2793 opt: 3154 Z-score: 2551.9 bits: 481.6 E(): 1.7e-133 Smith-Waterman score: 3154; 97.083% identity (98.125% similar) in 480 aa overlap (14-493:1-474) 10 20 30 40 50 60 bm0301 AETVVAATATTAAMAGAGPAPGLPGAGGPVVPGPGAGIPGKSGEERLKEMEAEMALFEQE ::::::::::: ::::::::::.:::::::::::::::::::::::: gi|819 MAGAGPAPGLPVAGGPVVPGPGVGIPGKSGEERLKEMEAEMALFEQE 10 20 30 40 70 80 90 100 110 120 bm0301 VLGAPVPGIPTAVPAVPTVPTVPTVEAMQVPAAPVIRPIIATNTYQQVQQTLEARAAAAA :::::: :::::::::::: :::::: :::::::::::::::::::::::::::: gi|819 VLGAPVTGIPTAVPAVPTV------EAMQVPPAPVIRPIIATNTYQQVQQTLEARAAAAA 50 60 70 80 90 100 130 140 150 160 170 180 bm0301 TVVPPMVGGPPFVGPVGFGPGDRSHLDSPEAREAMFLRRAAVAPQRAPILRPAFVPHVLQ ::::::::::::::::::::.::.:::::::::::::::::::::::::::::::::::: gi|819 TVVPPMVGGPPFVGPVGFGPADRGHLDSPEAREAMFLRRAAVAPQRAPILRPAFVPHVLQ 110 120 130 140 150 160 190 200 210 220 230 240 bm0301 RADSALSSAAAGPRPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAALRPP ::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::: gi|819 RADSALSSAAGGPRPMALRPPHQALVGPPLPGPPGPPMMLPPMARAPGPPLGSMAALRPP 170 180 190 200 210 220 250 260 270 280 290 300 bm0301 LEEPAAPRELGLGLGLGLKEKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIGPSLPLA :::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::: gi|819 LEEPAAPRELGLGLGLGLKDKEEAVVAAAAGLEEASAAVAVGAGGAPAGPAVIGPSLPLA 230 240 250 260 270 280 310 320 330 340 350 360 bm0301 LAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRPRPPRPEPPPGLMALEVPEPLGED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|819 LAMPLPEPEPLPLPLEVVRGLLPPLRIPELLSLRPRPRPPRPEPPPGLMALEVPEPLGED 290 300 310 320 330 340 370 380 390 400 410 420 bm0301 KKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|819 KKKGKPEKLKRCIRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSF 350 360 370 380 390 400 430 440 450 460 470 480 bm0301 LKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNLDVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|819 LKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNLDVV 410 420 430 440 450 460 490 bm0301 RKKQKEKKKLGLR ::::::::::::: gi|819 RKKQKEKKKLGLR 470 493 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Thu Aug 7 15:09:17 2008 done: Thu Aug 7 15:11:38 2008 Total Scan time: 901.860 Total Display time: 0.150 Function used was FASTA [version 34.26.5 April 26, 2007]