hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-15113940/chunk_1/iprscan-20080807-15113940.nocrc
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Query sequence: bm03010
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00076.12.fs RNA recognition motif. (a.k.a. RRM, RBD, or     84.8    5.1e-23   1
PF00076.12.ls RNA recognition motif. (a.k.a. RRM, RBD, or     86.8    6.3e-23   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00076.12.fs   1/1     396   467 ..     1    74 []    84.8  5.1e-23
PF00076.12.ls   1/1     396   467 ..     1    74 []    86.8  6.3e-23

Alignments of top-scoring domains:
PF00076.12.fs: domain 1 of 1, from 396 to 467: score 84.8, E = 5.1e-23
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      +f+g+L ++++++ L ++Fs f++++ +k++rD  + tg++kG++FV
     bm03010   396    IFCGDLGNEVNDDILARAFSRFPSFLKAKVIRD--KRTGKTKGYGFV 440  

                   eFedeedAekAldalnGkelggrelrv<-*
                    F+d++d  +A++++nGk++g+r+++    
     bm03010   441 SFKDPSDYVRAMREMNGKYVGSRPIKL    467  

PF00076.12.ls: domain 1 of 1, from 396 to 467: score 86.8, E = 6.3e-23
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      +f+g+L ++++++ L ++Fs f++++ +k++rD  + tg++kG++FV
     bm03010   396    IFCGDLGNEVNDDILARAFSRFPSFLKAKVIRD--KRTGKTKGYGFV 440  

                   eFedeedAekAldalnGkelggrelrv<-*
                    F+d++d  +A++++nGk++g+r+++    
     bm03010   441 SFKDPSDYVRAMREMNGKYVGSRPIKL    467  

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