# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Obm03027.fasta.nr -Q bm03027.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 bm03027, 443 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6798470 sequences Expectation_n fit: rho(ln(x))= 5.6958+/-0.000207; mu= 8.9591+/- 0.012 mean_var=127.5301+/-24.196, 0's: 31 Z-trim: 213 B-trim: 54 in 1/66 Lambda= 0.113571 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|62089172|dbj|BAD93030.1| CCCTC-binding factor ( ( 443) 3135 524.9 1.3e-146 gi|1706179|sp|P49711|CTCF_HUMAN Transcriptional re ( 727) 2929 491.4 2.6e-136 gi|30584039|gb|AAP36268.1| Homo sapiens CCCTC-bind ( 728) 2929 491.4 2.6e-136 gi|119603550|gb|EAW83144.1| CCCTC-binding factor ( ( 736) 2929 491.4 2.6e-136 gi|73957273|ref|XP_536815.2| PREDICTED: similar to ( 727) 2924 490.6 4.5e-136 gi|115305202|gb|AAI23742.1| CCCTC-binding factor ( ( 727) 2922 490.3 5.7e-136 gi|149699225|ref|XP_001497859.1| PREDICTED: simila ( 727) 2911 488.5 2e-135 gi|74140944|dbj|BAE22063.1| unnamed protein produc ( 598) 2876 482.6 9.3e-134 gi|148679347|gb|EDL11294.1| CCCTC-binding factor, ( 733) 2852 478.8 1.6e-132 gi|73957277|ref|XP_864453.1| PREDICTED: similar to ( 399) 2814 472.3 8.2e-131 gi|171474903|gb|ACB47392.1| CCCTC-binding factor [ ( 728) 2805 471.1 3.3e-130 gi|171474901|gb|ACB47391.1| CCCTC-binding factor [ ( 728) 2777 466.5 8.1e-129 gi|171474905|gb|ACB47393.1| CCCTC-binding factor [ ( 727) 2711 455.7 1.4e-125 gi|1706178|sp|Q08705|CTCF_CHICK Transcriptional re ( 728) 2706 454.9 2.6e-125 gi|114663149|ref|XP_001164059.1| PREDICTED: CCCTC- ( 699) 2539 427.5 4.3e-117 gi|30172804|sp|Q61164|CTCF_MOUSE Transcriptional r ( 736) 2380 401.5 3.1e-109 gi|1256410|gb|AAC52928.1| 11-zinc-finger transcrip ( 736) 2380 401.5 3.1e-109 gi|30172732|sp|Q9R1D1|CTCF_RAT Transcriptional rep ( 737) 2378 401.2 3.9e-109 gi|148679348|gb|EDL11295.1| CCCTC-binding factor, ( 683) 2375 400.6 5.2e-109 gi|149038028|gb|EDL92388.1| CCCTC-binding factor, ( 738) 2366 399.2 1.5e-108 gi|170284950|gb|AAI61099.1| Unknown (protein for M ( 734) 2197 371.5 3.3e-100 gi|47230373|emb|CAF99566.1| unnamed protein produc ( 814) 2155 364.7 4.1e-98 gi|34785484|gb|AAH57697.1| Ctcf protein [Xenopus l ( 735) 2153 364.3 4.9e-98 gi|11878220|gb|AAG40852.1|AF305695_1 transcription ( 735) 2152 364.1 5.4e-98 gi|148679349|gb|EDL11296.1| CCCTC-binding factor, ( 638) 2147 363.2 8.8e-98 gi|194208710|ref|XP_001497900.2| PREDICTED: simila ( 306) 2141 361.9 1.1e-97 gi|47132309|gb|AAT11782.1| CCCTC-binding factor [D ( 798) 2094 354.7 4.2e-95 gi|74148592|dbj|BAE24263.1| unnamed protein produc ( 596) 2045 346.5 9e-93 gi|90077898|dbj|BAE88629.1| unnamed protein produc ( 327) 1827 310.5 3.5e-82 gi|171474909|gb|ACB47395.1| brother of regulator o ( 607) 1608 274.9 3.3e-71 gi|147223335|emb|CAN13249.1| CCCTC-binding factor ( 647) 1601 273.8 7.5e-71 gi|109091564|ref|XP_001089797.1| PREDICTED: CCCTC- ( 667) 1569 268.5 2.9e-69 gi|30172878|sp|Q8NI51.1|BORIS_HUMAN Transcriptiona ( 663) 1563 267.6 5.7e-69 gi|57208876|emb|CAI42956.1| CCCTC-binding factor ( ( 663) 1563 267.6 5.7e-69 gi|111550142|gb|ABH10093.1| BORIS transcription fa ( 700) 1563 267.6 5.9e-69 gi|27762109|gb|AAL61541.1| zinc finger protein CTC ( 662) 1559 266.9 9e-69 gi|189054182|dbj|BAG36702.1| unnamed protein produ ( 663) 1557 266.6 1.1e-68 gi|119595922|gb|EAW75516.1| CCCTC-binding factor ( ( 662) 1556 266.4 1.3e-68 gi|111550168|gb|ABH10106.1| BORIS transcription fa ( 403) 1552 265.5 1.4e-68 gi|111550170|gb|ABH10107.1| BORIS transcription fa ( 460) 1552 265.6 1.6e-68 gi|114682788|ref|XP_514743.2| PREDICTED: CCCTC-bin ( 927) 1555 266.4 1.8e-68 gi|111550150|gb|ABH10097.1| BORIS transcription fa ( 665) 1552 265.8 2e-68 gi|194224571|ref|XP_001489795.2| PREDICTED: simila ( 657) 1541 264.0 6.9e-68 gi|193787500|dbj|BAG52706.1| unnamed protein produ ( 269) 1528 261.4 1.7e-67 gi|171474907|gb|ACB47394.1| brother of regulator o ( 631) 1529 262.0 2.6e-67 gi|90081912|dbj|BAE90237.1| unnamed protein produc ( 218) 1508 258.0 1.4e-66 gi|73992358|ref|XP_534463.2| PREDICTED: similar to ( 582) 1503 257.7 4.8e-66 gi|171474911|gb|ACB47396.1| brother of regulator o ( 502) 1501 257.3 5.5e-66 gi|149639862|ref|XP_001510594.1| PREDICTED: simila ( 849) 1501 257.5 7.7e-66 gi|111550176|gb|ABH10109.1| BORIS transcription fa ( 299) 1488 254.9 1.7e-65 >>gi|62089172|dbj|BAD93030.1| CCCTC-binding factor (zinc (443 aa) initn: 3135 init1: 3135 opt: 3135 Z-score: 2787.4 bits: 524.9 E(): 1.3e-146 Smith-Waterman score: 3135; 100.000% identity (100.000% similar) in 443 aa overlap (1-443:1-443) 10 20 30 40 50 60 bm0302 SQRTRCASGQIADQGLESWVLFSLLKLTLQPRRGTRPHKCPDCDMAFVTSGELVRHRRYK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 SQRTRCASGQIADQGLESWVLFSLLKLTLQPRRGTRPHKCPDCDMAFVTSGELVRHRRYK 10 20 30 40 50 60 70 80 90 100 110 120 bm0302 HTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKRHMRTHSGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 HTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKRHMRTHSGE 70 80 90 100 110 120 130 140 150 160 170 180 bm0302 KPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 KPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYIE 130 140 150 160 170 180 190 200 210 220 230 240 bm0302 QGKKCRYCDAVFHERYALIQHQKSHKNEKRFKCDQCDYACRQERHMIMHKRTHTGEKPYA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 QGKKCRYCDAVFHERYALIQHQKSHKNEKRFKCDQCDYACRQERHMIMHKRTHTGEKPYA 190 200 210 220 230 240 250 260 270 280 290 300 bm0302 CSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 CSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVE 250 260 270 280 290 300 310 320 330 340 350 360 bm0302 GENGGETKKSKRGRKRKMRSKKEDSSDSENAEPDLDDNEDEEEPAVEIEPEPEPQPVTPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 GENGGETKKSKRGRKRKMRSKKEDSSDSENAEPDLDDNEDEEEPAVEIEPEPEPQPVTPA 310 320 330 340 350 360 370 380 390 400 410 420 bm0302 PPPAKKRRGRPPGRTNQPKQNQPTAIIQVEDQNTGAIENIIVEVKKEPDAEPAEGEEEEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 PPPAKKRRGRPPGRTNQPKQNQPTAIIQVEDQNTGAIENIIVEVKKEPDAEPAEGEEEEA 370 380 390 400 410 420 430 440 bm0302 QPAATDAPNGDLTPEMILSMMDR ::::::::::::::::::::::: gi|620 QPAATDAPNGDLTPEMILSMMDR 430 440 >>gi|1706179|sp|P49711|CTCF_HUMAN Transcriptional repres (727 aa) initn: 2929 init1: 2929 opt: 2929 Z-score: 2602.5 bits: 491.4 E(): 2.6e-136 Smith-Waterman score: 2929; 98.100% identity (99.050% similar) in 421 aa overlap (23-443:307-727) 10 20 30 40 50 bm0302 SQRTRCASGQIADQGLESWVLFSLLKLTLQPRRGTRPHKCPDCDMAFVTSGE .::. :. . ::::::::::::::::::: gi|170 RRSNLDRHMKSHTDERPHKCHLCGRAFRTVTLLRNHLNTHTGTRPHKCPDCDMAFVTSGE 280 290 300 310 320 330 60 70 80 90 100 110 bm0302 LVRHRRYKHTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|170 LVRHRRYKHTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKR 340 350 360 370 380 390 120 130 140 150 160 170 bm0302 HMRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|170 HMRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHL 400 410 420 430 440 450 180 190 200 210 220 230 bm0302 RKQHSYIEQGKKCRYCDAVFHERYALIQHQKSHKNEKRFKCDQCDYACRQERHMIMHKRT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|170 RKQHSYIEQGKKCRYCDAVFHERYALIQHQKSHKNEKRFKCDQCDYACRQERHMIMHKRT 460 470 480 490 500 510 240 250 260 270 280 290 bm0302 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|170 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN 520 530 540 550 560 570 300 310 320 330 340 350 bm0302 CAGPDGVEGENGGETKKSKRGRKRKMRSKKEDSSDSENAEPDLDDNEDEEEPAVEIEPEP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|170 CAGPDGVEGENGGETKKSKRGRKRKMRSKKEDSSDSENAEPDLDDNEDEEEPAVEIEPEP 580 590 600 610 620 630 360 370 380 390 400 410 bm0302 EPQPVTPAPPPAKKRRGRPPGRTNQPKQNQPTAIIQVEDQNTGAIENIIVEVKKEPDAEP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|170 EPQPVTPAPPPAKKRRGRPPGRTNQPKQNQPTAIIQVEDQNTGAIENIIVEVKKEPDAEP 640 650 660 670 680 690 420 430 440 bm0302 AEGEEEEAQPAATDAPNGDLTPEMILSMMDR ::::::::::::::::::::::::::::::: gi|170 AEGEEEEAQPAATDAPNGDLTPEMILSMMDR 700 710 720 >>gi|30584039|gb|AAP36268.1| Homo sapiens CCCTC-binding (728 aa) initn: 2929 init1: 2929 opt: 2929 Z-score: 2602.5 bits: 491.4 E(): 2.6e-136 Smith-Waterman score: 2929; 98.100% identity (99.050% similar) in 421 aa overlap (23-443:307-727) 10 20 30 40 50 bm0302 SQRTRCASGQIADQGLESWVLFSLLKLTLQPRRGTRPHKCPDCDMAFVTSGE .::. :. . ::::::::::::::::::: gi|305 RRSNLDRHMKSHTDERPHKCHLCGRAFRTVTLLRNHLNTHTGTRPHKCPDCDMAFVTSGE 280 290 300 310 320 330 60 70 80 90 100 110 bm0302 LVRHRRYKHTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 LVRHRRYKHTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKR 340 350 360 370 380 390 120 130 140 150 160 170 bm0302 HMRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 HMRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHL 400 410 420 430 440 450 180 190 200 210 220 230 bm0302 RKQHSYIEQGKKCRYCDAVFHERYALIQHQKSHKNEKRFKCDQCDYACRQERHMIMHKRT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 RKQHSYIEQGKKCRYCDAVFHERYALIQHQKSHKNEKRFKCDQCDYACRQERHMIMHKRT 460 470 480 490 500 510 240 250 260 270 280 290 bm0302 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN 520 530 540 550 560 570 300 310 320 330 340 350 bm0302 CAGPDGVEGENGGETKKSKRGRKRKMRSKKEDSSDSENAEPDLDDNEDEEEPAVEIEPEP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 CAGPDGVEGENGGETKKSKRGRKRKMRSKKEDSSDSENAEPDLDDNEDEEEPAVEIEPEP 580 590 600 610 620 630 360 370 380 390 400 410 bm0302 EPQPVTPAPPPAKKRRGRPPGRTNQPKQNQPTAIIQVEDQNTGAIENIIVEVKKEPDAEP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 EPQPVTPAPPPAKKRRGRPPGRTNQPKQNQPTAIIQVEDQNTGAIENIIVEVKKEPDAEP 640 650 660 670 680 690 420 430 440 bm0302 AEGEEEEAQPAATDAPNGDLTPEMILSMMDR ::::::::::::::::::::::::::::::: gi|305 AEGEEEEAQPAATDAPNGDLTPEMILSMMDRL 700 710 720 >>gi|119603550|gb|EAW83144.1| CCCTC-binding factor (zinc (736 aa) initn: 2929 init1: 2929 opt: 2929 Z-score: 2602.4 bits: 491.4 E(): 2.6e-136 Smith-Waterman score: 2929; 98.100% identity (99.050% similar) in 421 aa overlap (23-443:316-736) 10 20 30 40 50 bm0302 SQRTRCASGQIADQGLESWVLFSLLKLTLQPRRGTRPHKCPDCDMAFVTSGE .::. :. . ::::::::::::::::::: gi|119 RRSNLDRHMKSHTDERPHKCHLCGRAFRTVTLLRNHLNTHTGTRPHKCPDCDMAFVTSGE 290 300 310 320 330 340 60 70 80 90 100 110 bm0302 LVRHRRYKHTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LVRHRRYKHTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKR 350 360 370 380 390 400 120 130 140 150 160 170 bm0302 HMRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 HMRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHL 410 420 430 440 450 460 180 190 200 210 220 230 bm0302 RKQHSYIEQGKKCRYCDAVFHERYALIQHQKSHKNEKRFKCDQCDYACRQERHMIMHKRT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 RKQHSYIEQGKKCRYCDAVFHERYALIQHQKSHKNEKRFKCDQCDYACRQERHMIMHKRT 470 480 490 500 510 520 240 250 260 270 280 290 bm0302 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN 530 540 550 560 570 580 300 310 320 330 340 350 bm0302 CAGPDGVEGENGGETKKSKRGRKRKMRSKKEDSSDSENAEPDLDDNEDEEEPAVEIEPEP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 CAGPDGVEGENGGETKKSKRGRKRKMRSKKEDSSDSENAEPDLDDNEDEEEPAVEIEPEP 590 600 610 620 630 640 360 370 380 390 400 410 bm0302 EPQPVTPAPPPAKKRRGRPPGRTNQPKQNQPTAIIQVEDQNTGAIENIIVEVKKEPDAEP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 EPQPVTPAPPPAKKRRGRPPGRTNQPKQNQPTAIIQVEDQNTGAIENIIVEVKKEPDAEP 650 660 670 680 690 700 420 430 440 bm0302 AEGEEEEAQPAATDAPNGDLTPEMILSMMDR ::::::::::::::::::::::::::::::: gi|119 AEGEEEEAQPAATDAPNGDLTPEMILSMMDR 710 720 730 >>gi|73957273|ref|XP_536815.2| PREDICTED: similar to Tra (727 aa) initn: 2924 init1: 2924 opt: 2924 Z-score: 2598.1 bits: 490.6 E(): 4.5e-136 Smith-Waterman score: 2924; 97.862% identity (99.050% similar) in 421 aa overlap (23-443:307-727) 10 20 30 40 50 bm0302 SQRTRCASGQIADQGLESWVLFSLLKLTLQPRRGTRPHKCPDCDMAFVTSGE .::. :. . ::::::::::::::::::: gi|739 RRSNLDRHMKSHTDERPHKCHLCGRAFRTVTLLRNHLNTHTGTRPHKCPDCDMAFVTSGE 280 290 300 310 320 330 60 70 80 90 100 110 bm0302 LVRHRRYKHTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 LVRHRRYKHTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKR 340 350 360 370 380 390 120 130 140 150 160 170 bm0302 HMRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 HMRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHL 400 410 420 430 440 450 180 190 200 210 220 230 bm0302 RKQHSYIEQGKKCRYCDAVFHERYALIQHQKSHKNEKRFKCDQCDYACRQERHMIMHKRT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 RKQHSYIEQGKKCRYCDAVFHERYALIQHQKSHKNEKRFKCDQCDYACRQERHMIMHKRT 460 470 480 490 500 510 240 250 260 270 280 290 bm0302 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN 520 530 540 550 560 570 300 310 320 330 340 350 bm0302 CAGPDGVEGENGGETKKSKRGRKRKMRSKKEDSSDSENAEPDLDDNEDEEEPAVEIEPEP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 CAGPDGVEGENGGETKKSKRGRKRKMRSKKEDSSDSENAEPDLDDNEDEEEPAVEIEPEP 580 590 600 610 620 630 360 370 380 390 400 410 bm0302 EPQPVTPAPPPAKKRRGRPPGRTNQPKQNQPTAIIQVEDQNTGAIENIIVEVKKEPDAEP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 EPQPVTPAPPPAKKRRGRPPGRTNQPKQNQPTAIIQVEDQNTGAIENIIVEVKKEPDAEP 640 650 660 670 680 690 420 430 440 bm0302 AEGEEEEAQPAATDAPNGDLTPEMILSMMDR .:::::::::::::::::::::::::::::: gi|739 VEGEEEEAQPAATDAPNGDLTPEMILSMMDR 700 710 720 >>gi|115305202|gb|AAI23742.1| CCCTC-binding factor (zinc (727 aa) initn: 2922 init1: 2922 opt: 2922 Z-score: 2596.3 bits: 490.3 E(): 5.7e-136 Smith-Waterman score: 2922; 97.862% identity (99.050% similar) in 421 aa overlap (23-443:307-727) 10 20 30 40 50 bm0302 SQRTRCASGQIADQGLESWVLFSLLKLTLQPRRGTRPHKCPDCDMAFVTSGE .::. :. . ::::::::::::::::::: gi|115 RRSNLDRHMKSHTDERPHKCHLCGRAFRTVTLLRNHLNTHTGTRPHKCPDCDMAFVTSGE 280 290 300 310 320 330 60 70 80 90 100 110 bm0302 LVRHRRYKHTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|115 LVRHRRYKHTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKR 340 350 360 370 380 390 120 130 140 150 160 170 bm0302 HMRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|115 HMRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHL 400 410 420 430 440 450 180 190 200 210 220 230 bm0302 RKQHSYIEQGKKCRYCDAVFHERYALIQHQKSHKNEKRFKCDQCDYACRQERHMIMHKRT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|115 RKQHSYIEQGKKCRYCDAVFHERYALIQHQKSHKNEKRFKCDQCDYACRQERHMIMHKRT 460 470 480 490 500 510 240 250 260 270 280 290 bm0302 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|115 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN 520 530 540 550 560 570 300 310 320 330 340 350 bm0302 CAGPDGVEGENGGETKKSKRGRKRKMRSKKEDSSDSENAEPDLDDNEDEEEPAVEIEPEP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|115 CAGPDGVEGENGGETKKSKRGRKRKMRSKKEDSSDSENAEPDLDDNEDEEEPAVEIEPEP 580 590 600 610 620 630 360 370 380 390 400 410 bm0302 EPQPVTPAPPPAKKRRGRPPGRTNQPKQNQPTAIIQVEDQNTGAIENIIVEVKKEPDAEP ::::::::::::::::::::::::::::.::::::::::::::::::::::::::::::: gi|115 EPQPVTPAPPPAKKRRGRPPGRTNQPKQTQPTAIIQVEDQNTGAIENIIVEVKKEPDAEP 640 650 660 670 680 690 420 430 440 bm0302 AEGEEEEAQPAATDAPNGDLTPEMILSMMDR ::::::::::::::::::::::::::::::: gi|115 AEGEEEEAQPAATDAPNGDLTPEMILSMMDR 700 710 720 >>gi|149699225|ref|XP_001497859.1| PREDICTED: similar to (727 aa) initn: 2911 init1: 2911 opt: 2911 Z-score: 2586.6 bits: 488.5 E(): 2e-135 Smith-Waterman score: 2911; 97.387% identity (99.050% similar) in 421 aa overlap (23-443:307-727) 10 20 30 40 50 bm0302 SQRTRCASGQIADQGLESWVLFSLLKLTLQPRRGTRPHKCPDCDMAFVTSGE .::. :. . ::::::::::::::::::: gi|149 RRSNLDRHMKSHTDERPHKCHLCGRAFRTVTLLRNHLNTHTGTRPHKCPDCDMAFVTSGE 280 290 300 310 320 330 60 70 80 90 100 110 bm0302 LVRHRRYKHTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 LVRHRRYKHTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKR 340 350 360 370 380 390 120 130 140 150 160 170 bm0302 HMRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 HMRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHL 400 410 420 430 440 450 180 190 200 210 220 230 bm0302 RKQHSYIEQGKKCRYCDAVFHERYALIQHQKSHKNEKRFKCDQCDYACRQERHMIMHKRT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 RKQHSYIEQGKKCRYCDAVFHERYALIQHQKSHKNEKRFKCDQCDYACRQERHMIMHKRT 460 470 480 490 500 510 240 250 260 270 280 290 bm0302 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN 520 530 540 550 560 570 300 310 320 330 340 350 bm0302 CAGPDGVEGENGGETKKSKRGRKRKMRSKKEDSSDSENAEPDLDDNEDEEEPAVEIEPEP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 CAGPDGVEGENGGETKKSKRGRKRKMRSKKEDSSDSENAEPDLDDNEDEEEPAVEIEPEP 580 590 600 610 620 630 360 370 380 390 400 410 bm0302 EPQPVTPAPPPAKKRRGRPPGRTNQPKQNQPTAIIQVEDQNTGAIENIIVEVKKEPDAEP ::::::::::::::::::::::::::::.:::::::::::.::::::::::::::::::: gi|149 EPQPVTPAPPPAKKRRGRPPGRTNQPKQTQPTAIIQVEDQSTGAIENIIVEVKKEPDAEP 640 650 660 670 680 690 420 430 440 bm0302 AEGEEEEAQPAATDAPNGDLTPEMILSMMDR .:::::::::::::::::::::::::::::: gi|149 VEGEEEEAQPAATDAPNGDLTPEMILSMMDR 700 710 720 >>gi|74140944|dbj|BAE22063.1| unnamed protein product [M (598 aa) initn: 2364 init1: 2364 opt: 2876 Z-score: 2556.5 bits: 482.6 E(): 9.3e-134 Smith-Waterman score: 2876; 95.338% identity (96.970% similar) in 429 aa overlap (23-443:170-598) 10 20 30 40 50 bm0302 SQRTRCASGQIADQGLESWVLFSLLKLTLQPRRGTRPHKCPDCDMAFVTSGE .::. :. . ::::::::::::::::::: gi|741 RRSNLDRHMKSHTDERPHKCHLCGRAFRTVTLLRNHLNTHTGTRPHKCPDCDMAFVTSGE 140 150 160 170 180 190 60 70 80 90 100 110 bm0302 LVRHRRYKHTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 LVRHRRYKHTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKR 200 210 220 230 240 250 120 130 140 150 160 170 bm0302 HMRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 HMRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHL 260 270 280 290 300 310 180 190 200 210 220 230 bm0302 RKQHSYIEQGKKCRYCDAVFHERYALIQHQKSHKNEKRFKCDQCDYACRQERHMIMHKRT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 RKQHSYIEQGKKCRYCDAVFHERYALIQHQKSHKNEKRFKCDQCDYACRQERHMIMHKRT 320 330 340 350 360 370 240 250 260 270 280 290 bm0302 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN 380 390 400 410 420 430 300 310 320 330 340 350 bm0302 CAGPDGVEGENGGETKKSKRGRKRKMRSKKEDSSDSENAEPDLDDNEDEEEPAVEIEPEP :::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::: gi|741 CAGPDGVEGENGGETKKSKRGRKRKMRSKKEDSSDSENAEPDLDDNEEEEEPAVEIEPEP 440 450 460 470 480 490 360 370 380 390 400 bm0302 EPQP--------VTPAPPPAKKRRGRPPGRTNQPKQNQPTAIIQVEDQNTGAIENIIVEV :::: :.:::::::::::::::::::::::::::::::::::::::::::::: gi|741 EPQPQPPPPPQPVAPAPPPAKKRRGRPPGRTNQPKQNQPTAIIQVEDQNTGAIENIIVEV 500 510 520 530 540 550 410 420 430 440 bm0302 KKEPDAEPAEGEEEEAQPAATDAPNGDLTPEMILSMMDR ::::::::::::::::: :.::::::::::::::::::: gi|741 KKEPDAEPAEGEEEEAQAATTDAPNGDLTPEMILSMMDR 560 570 580 590 >>gi|148679347|gb|EDL11294.1| CCCTC-binding factor, isof (733 aa) initn: 2614 init1: 2364 opt: 2852 Z-score: 2534.3 bits: 478.8 E(): 1.6e-132 Smith-Waterman score: 2852; 94.872% identity (96.503% similar) in 429 aa overlap (23-443:307-733) 10 20 30 40 50 bm0302 SQRTRCASGQIADQGLESWVLFSLLKLTLQPRRGTRPHKCPDCDMAFVTSGE .::. :. . ::::::::::::::::::: gi|148 RRSNLDRHMKSHTDERPHKCHLCGRAFRTVTLLRNHLNTHTGTRPHKCPDCDMAFVTSGE 280 290 300 310 320 330 60 70 80 90 100 110 bm0302 LVRHRRYKHTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 LVRHRRYKHTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKR 340 350 360 370 380 390 120 130 140 150 160 170 bm0302 HMRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 HMRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHL 400 410 420 430 440 450 180 190 200 210 220 230 bm0302 RKQHSYIEQGKKCRYCDAVFHERYALIQHQKSHKNEKRFKCDQCDYACRQERHMIMHKRT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 RKQHSYIEQGKKCRYCDAVFHERYALIQHQKSHKNEKRFKCDQCDYACRQERHMIMHKRT 460 470 480 490 500 510 240 250 260 270 280 290 bm0302 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 HTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADN 520 530 540 550 560 570 300 310 320 330 340 350 bm0302 CAGPDGVEGENGGETKKSKRGRKRKMRSKKEDSSDSENAEPDLDDNEDEEEPAVEIEPEP :::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::: gi|148 CAGPDGVEGENGGETKKSKRGRKRKMRSKKEDSSDSENAEPDLDDNEEEEEPAVEIEPEP 580 590 600 610 620 630 360 370 380 390 400 bm0302 EPQP--------VTPAPPPAKKRRGRPPGRTNQPKQNQPTAIIQVEDQNTGAIENIIVEV :::: :.::::::::::::::::::::::::: ::::::::::::::::::: gi|148 EPQPQPPPPPQPVAPAPPPAKKRRGRPPGRTNQPKQNQP--IIQVEDQNTGAIENIIVEV 640 650 660 670 680 690 410 420 430 440 bm0302 KKEPDAEPAEGEEEEAQPAATDAPNGDLTPEMILSMMDR ::::::::::::::::: :.::::::::::::::::::: gi|148 KKEPDAEPAEGEEEEAQAATTDAPNGDLTPEMILSMMDR 700 710 720 730 >>gi|73957277|ref|XP_864453.1| PREDICTED: similar to Tra (399 aa) initn: 2814 init1: 2814 opt: 2814 Z-score: 2503.7 bits: 472.3 E(): 8.2e-131 Smith-Waterman score: 2814; 99.749% identity (100.000% similar) in 399 aa overlap (45-443:1-399) 20 30 40 50 60 70 bm0302 GLESWVLFSLLKLTLQPRRGTRPHKCPDCDMAFVTSGELVRHRRYKHTHEKPFKCSMCDY :::::::::::::::::::::::::::::: gi|739 MAFVTSGELVRHRRYKHTHEKPFKCSMCDY 10 20 30 80 90 100 110 120 130 bm0302 ASVEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKRHMRTHSGEKPYECYICHARFTQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 ASVEVSKLKRHIRSHTGERPFQCSLCSYASRDTYKLKRHMRTHSGEKPYECYICHARFTQ 40 50 60 70 80 90 140 150 160 170 180 190 bm0302 SGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYIEQGKKCRYCDAVFHE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 SGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYIEQGKKCRYCDAVFHE 100 110 120 130 140 150 200 210 220 230 240 250 bm0302 RYALIQHQKSHKNEKRFKCDQCDYACRQERHMIMHKRTHTGEKPYACSHCDKTFRQKQLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 RYALIQHQKSHKNEKRFKCDQCDYACRQERHMIMHKRTHTGEKPYACSHCDKTFRQKQLL 160 170 180 190 200 210 260 270 280 290 300 310 bm0302 DMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENGGETKKSKRGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 DMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENGGETKKSKRGR 220 230 240 250 260 270 320 330 340 350 360 370 bm0302 KRKMRSKKEDSSDSENAEPDLDDNEDEEEPAVEIEPEPEPQPVTPAPPPAKKRRGRPPGR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 KRKMRSKKEDSSDSENAEPDLDDNEDEEEPAVEIEPEPEPQPVTPAPPPAKKRRGRPPGR 280 290 300 310 320 330 380 390 400 410 420 430 bm0302 TNQPKQNQPTAIIQVEDQNTGAIENIIVEVKKEPDAEPAEGEEEEAQPAATDAPNGDLTP ::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::: gi|739 TNQPKQNQPTAIIQVEDQNTGAIENIIVEVKKEPDAEPVEGEEEEAQPAATDAPNGDLTP 340 350 360 370 380 390 440 bm0302 EMILSMMDR ::::::::: gi|739 EMILSMMDR 443 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Thu Aug 7 15:15:05 2008 done: Thu Aug 7 15:17:30 2008 Total Scan time: 823.440 Total Display time: 0.130 Function used was FASTA [version 34.26.5 April 26, 2007]