hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080807/iprscan-20080807-15173185/chunk_1/iprscan-20080807-15173185.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: bm03027 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 216.9 4.1e-62 9 PF00096.16.fs Zinc finger, C2H2 type 199.2 8.8e-57 9 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00096.16.ls 1/9 38 61 .. 1 24 [] 30.1 7e-06 PF00096.16.fs 1/9 38 61 .. 1 24 [] 28.2 9e-06 PF00096.16.ls 2/9 67 89 .. 1 24 [] 23.9 0.00053 PF00096.16.fs 3/9 95 117 .. 1 24 [] 24.0 9.8e-05 PF00096.16.ls 3/9 95 117 .. 1 24 [] 26.0 0.00013 PF00096.16.ls 4/9 123 146 .. 1 24 [] 22.8 0.0012 PF00096.16.ls 5/9 153 176 .. 1 24 [] 23.4 0.00075 PF00096.16.ls 6/9 183 205 .. 1 24 [] 18.1 0.03 PF00096.16.ls 7/9 211 233 .. 1 24 [] 20.2 0.007 PF00096.16.fs 8/9 239 262 .. 1 24 [] 22.7 0.0002 PF00096.16.ls 8/9 239 262 .. 1 24 [] 24.7 0.00031 PF00096.16.fs 9/9 271 293 .. 1 24 [] 25.9 3.3e-05 PF00096.16.ls 9/9 271 293 .. 1 24 [] 27.9 3.4e-05 PF02178.9.ls 1/1 365 377 .. 1 13 [] 9.2 0.54 Alignments of top-scoring domains: PF00096.16.ls: domain 1 of 9, from 38 to 61: score 30.1, E = 7e-06 *->ykCpfdCgksFsrksnLkrHlrt.H<-* +kCp dC+ +F ++++L rH+r +H bm03027 38 HKCP-DCDMAFVTSGELVRHRRYkH 61 PF00096.16.fs: domain 1 of 9, from 38 to 61: score 28.2, E = 9e-06 *->ykCpfdCgksFsrksnLkrHlrt.H<-* +kCp dC+ +F ++++L rH+r +H bm03027 38 HKCP-DCDMAFVTSGELVRHRRYkH 61 PF00096.16.ls: domain 2 of 9, from 67 to 89: score 23.9, E = 0.00053 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ C+++ s LkrH+r+H bm03027 67 FKCS-MCDYASVEVSKLKRHIRSH 89 PF00096.16.fs: domain 3 of 9, from 95 to 117: score 24.0, E = 9.8e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ C ++ ++ + LkrH+rtH bm03027 95 FQCS-LCSYASRDTYKLKRHMRTH 117 PF00096.16.ls: domain 3 of 9, from 95 to 117: score 26.0, E = 0.00013 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ C ++ ++ + LkrH+rtH bm03027 95 FQCS-LCSYASRDTYKLKRHMRTH 117 PF00096.16.ls: domain 4 of 9, from 123 to 146: score 22.8, E = 0.0012 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y+C +C+ +F++++++k+H+ +H bm03027 123 YECY-ICHARFTQSGTMKMHILQkH 146 PF00096.16.ls: domain 5 of 9, from 153 to 176: score 23.4, E = 0.00075 *->ykCpfdCgksFsrksnLkrHlrt.H<-* + Cp +C+++ rks+L Hlr++H bm03027 153 FHCP-HCDTVIARKSDLGVHLRKqH 176 PF00096.16.ls: domain 6 of 9, from 183 to 205: score 18.1, E = 0.03 *->ykCpfdCgksFsrksnLkrHlrtH<-* kC +C+ +F ++ L +H+++H bm03027 183 KKCR-YCDAVFHERYALIQHQKSH 205 PF00096.16.ls: domain 7 of 9, from 211 to 233: score 20.2, E = 0.007 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +C++++++ ++ +H+rtH bm03027 211 FKCD-QCDYACRQERHMIMHKRTH 233 PF00096.16.fs: domain 8 of 9, from 239 to 262: score 22.7, E = 0.0002 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y C+ +C+k+F++k L +H ++ H bm03027 239 YACS-HCDKTFRQKQLLDMHFKRyH 262 PF00096.16.ls: domain 8 of 9, from 239 to 262: score 24.7, E = 0.00031 *->ykCpfdCgksFsrksnLkrHlrt.H<-* y C+ +C+k+F++k L +H ++ H bm03027 239 YACS-HCDKTFRQKQLLDMHFKRyH 262 PF00096.16.fs: domain 9 of 9, from 271 to 293: score 25.9, E = 3.3e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+F+r+ ++ rH + bm03027 271 FVCS-KCGKTFTRRNTMARHADNC 293 PF00096.16.ls: domain 9 of 9, from 271 to 293: score 27.9, E = 3.4e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+F+r+ ++ rH + bm03027 271 FVCS-KCGKTFTRRNTMARHADNC 293 PF02178.9.ls: domain 1 of 1, from 365 to 377: score 9.2, E = 0.54 *->kRkRGRPrKaata<-* k++RGRP+ ++ bm03027 365 KKRRGRPPGRTNQ 377 //