hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-15232495/chunk_1/iprscan-20080807-15232495.nocrc
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Query sequence: bm03032
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00451                                                  49.1      6e-10   2
SM00355                                                  42.0    8.2e-08   4

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00451      1/2      24    58 ..     1    37 []    26.0   0.0053
SM00355      1/4      27    51 ..     1    23 []     7.2       48
SM00451      2/2      87   121 ..     1    37 []    23.1    0.039
SM00355      2/4      90   114 ..     1    23 []    19.7     0.41
SM00355      3/4     275   298 ..     1    23 []     3.7  1.2e+02
SM00355      4/4     326   353 ..     1    23 []    11.3       17

Alignments of top-scoring domains:
SM00451: domain 1 of 2, from 24 to 58: score 26.0, E = 0.0053
                   *->tggfyCklCnvtfkddeisvreaHlkGkkHkknvkky<-*
                      +  + C +C+v f  d  ++ +aH+k+ +H+ n+++    
     bm03032    24    MATYTCITCRVAFR-DADMQ-RAHYKTDWHRYNLRRK    58   

SM00355: domain 1 of 4, from 27 to 51: score 7.2, E = 48
                   *->ykCpigCgksfssk.aLkrHmr..vH<-*
                      y+C   C   f++++  + H++++ H   
     bm03032    27    YTCIT-CRVAFRDAdMQRAHYKtdWH    51   

SM00451: domain 2 of 2, from 87 to 121: score 23.1, E = 0.039
                   *->tggfyCklCnvtfkddeisvreaHlkGkkHkknvkky<-*
                      ++  yC +C++ f   + +++e+Hlk+++H + +kk    
     bm03032    87    GSATYCTVCSKKFA--SFNAYENHLKSRRHVELEKKA    121  

SM00355: domain 2 of 4, from 90 to 114: score 19.7, E = 0.41
                   *->ykCpigCgksfssk.aLkrHmr..vH<-*
                        C++ C+k+f s +a+++H+++++H   
     bm03032    90    TYCTV-CSKKFASFnAYENHLKsrRH    114  

SM00355: domain 3 of 4, from 275 to 298: score 3.7, E = 1.2e+02
                   *->ykCpigCgksfssk.aLkrHmr.vH<-*
                        C + C+ + ss    + Hm + H   
     bm03032   275    TDCLF-CSHHSSSLmKNVAHMTkDH    298  

SM00355: domain 4 of 4, from 326 to 353: score 11.3, E = 17
                   *->ykCpigCg...ksfssk.aLkrHmr..vH<-*
                        C + C++++ksf s +a + Hm +++H   
     bm03032   326    KICLW-CNekgKSFYSTeAVQAHMNdkSH    353  

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