hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090617/iprscan-20090617-23162868/chunk_1/iprscan-20090617-23162868.nocrc
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Query sequence: bm03069
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00169.19.fs PH domain                                       29.2      2e-08   1
PF00169.19.ls PH domain                                       30.8    4.5e-06   1
PF02185.6.ls Hr1 repeat                                      15.0     0.0076   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02185.6.ls   1/1      55   127 ..     1    82 []    15.0   0.0076
PF00169.19.fs   1/1     329   430 ..     1    87 [.    29.2    2e-08
PF00169.19.ls   1/1     329   435 ..     1    92 []    30.8  4.5e-06

Alignments of top-scoring domains:
PF02185.6.ls: domain 1 of 1, from 55 to 127: score 15.0, E = 0.0076
                   *->drleqLrkkievElkikeGAEnmlrlysgKatkdrkvlqeaqqklre
                      +   +L++k++ E +++eGA ++l      a ++r+   ea + l  
     bm03069    55    LEDTELQRKLDHEIRMREGACKLLA-----ACSQREQALEATKSLLV 96   

                   SkqKRLENielLkeeLeelqlevqpsdpeneslee<-*
                   ++++    i     eL+++++ ++   ++ +++++   
     bm03069    97 CNSR----ILSYMGELQRRKEAQVLGKTSRRPSDS    127  

PF00169.19.fs: domain 1 of 1, from 329 to 430: score 29.2, E = 2e-08
                   *->vikeGwLlkkg..gkkswkkRyfvLfddvLlyykdkk.....kkpkg
                      ++ +G L+++  +   +w +++ vL++++L++y+ + + +++++p  
     bm03069   329    PTASGTLRVQQagEMQNWAQVHGVLKGTNLFCYRQPEdadtgEEPLL 375  

                   sipLsgi.qvtkvpdn...krkncFeirt.dr...etlllqaeseeerke
                   +i +++ ++v+  +  +  +r++++ i+++ ++++ t++lq+es e +++
     bm03069   376 TIAVNKEtRVRAGELDqalGRPFTLSISNqYGddeVTHTLQTESREALQS 425  

                   Wvkai<-*
                   W++a+   
     bm03069   426 WMEAL    430  

PF00169.19.ls: domain 1 of 1, from 329 to 435: score 30.8, E = 4.5e-06
                   *->vikeGwLlkkg..gkkswkkRyfvLfddvLlyykdkk.....kkpkg
                      ++ +G L+++  +   +w +++ vL++++L++y+ + + +++++p  
     bm03069   329    PTASGTLRVQQagEMQNWAQVHGVLKGTNLFCYRQPEdadtgEEPLL 375  

                   sipLsgi.qvtkvpdn...krkncFeirt.dr...etlllqaeseeerke
                   +i +++ ++v+  +  +  +r++++ i+++ ++++ t++lq+es e +++
     bm03069   376 TIAVNKEtRVRAGELDqalGRPFTLSISNqYGddeVTHTLQTESREALQS 425  

                   Wvkaiqsair<-*
                   W++a+ ++ +   
     bm03069   426 WMEALWQLFF    435  

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