hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090617/iprscan-20090617-23162868/chunk_1/iprscan-20090617-23162868.nocrc
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Query sequence: bm03069
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00742                                                  60.6    1.9e-13   1
SM00233                                                  45.3    7.8e-09   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00742     1/1      55   118 ..     1    71 []    60.6  1.9e-13
SM00233     1/1     329   437 ..     1    82 []    45.3  7.8e-09

Alignments of top-scoring domains:
SM00742: domain 1 of 1, from 55 to 118: score 60.6, E = 1.9e-13
                   *->lrleeLrrkiekElkvkeGAenmrkltsnkkkkakDrKvlseaqqml
                      l+++eL+rk+++E +++eGA+++++++s+++       +  ea+++l
     bm03069    55    LEDTELQRKLDHEIRMREGACKLLAACSQRE-------QALEATKSL 94   

                   reSnrklelLkeeLeklqaelpae<-*
                    ++n+++  +++eL+++++  ++    
     bm03069    95 LVCNSRILSYMGELQRRKEAQVLG    118  

SM00233: domain 1 of 1, from 329 to 437: score 45.3, E = 7.8e-09
                   *->vikeGwLlkks...k.swkkryfvLfngvLlyyksk.......kpkg
                      ++ +G+L+++  +  ++w +++ vL++  L++y+++++ +++++p  
     bm03069   329    PTASGTLRVQQageMqNWAQVHGVLKGTNLFCYRQPedadtgeEPLL 375  

                   sipLsgc.svre.p.......cFeivt.dr......tlllqAeseeeree
                   +i +++ ++vr ++ +   ++ F+++ +++ ++++ t++lq+es e +++
     bm03069   376 TIAVNKEtRVRAgEldqalgrPFTLSIsNQygddevTHTLQTESREALQS 425  

                   Wvealqsaiaka<-*
                   W+eal ++  +    
     bm03069   426 WMEALWQLFFDM    437  

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