hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-15284754/chunk_1/iprscan-20080807-15284754.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: bm03080
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00076.12.fs RNA recognition motif. (a.k.a. RRM, RBD, or    182.3    1.1e-51   3
PF00076.12.ls RNA recognition motif. (a.k.a. RRM, RBD, or    157.3    3.7e-44   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00076.12.fs   1/3      10    44 ..    40    74 .]    28.9  2.4e-07
PF00076.12.ls   1/2     106   176 ..     1    74 []    66.5  8.2e-17
PF00076.12.fs   2/3     106   176 ..     1    74 []    64.5  2.5e-17
PF00076.12.ls   2/2     540   609 ..     1    74 []    90.8  3.8e-24
PF00076.12.fs   3/3     540   609 ..     1    74 []    88.9  3.6e-24

Alignments of top-scoring domains:
PF00076.12.fs: domain 1 of 3, from 10 to 44: score 28.9, E = 2.4e-07
                   *->rskGfaFVeFedeedAekAldalnGkelggrelrv<-*
                      + kG+a VeF+ ee+++kA + ln++ l gr+l+v   
     bm03080    10    KKKGCAVVEFKMEESMKKAAEVLNKHSLSGRPLKV    44   

PF00076.12.ls: domain 1 of 2, from 106 to 176: score 66.5, E = 8.2e-17
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      +fV NL + + +++Lk+ Fs  G +++++i  D     g+s+G + V
     bm03080   106    VFVANLDYKVGWKKLKEVFSMAGVVVRADILED---KDGKSRGIGTV 149  

                   eFedeedAekAldalnGkelggrelrv<-*
                   +Fe++ +A  A++  nG+ l +r+++v   
     bm03080   150 TFEQSIEAVQAISMFNGQLLFDRPMHV    176  

PF00076.12.fs: domain 2 of 3, from 106 to 176: score 64.5, E = 2.5e-17
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      +fV NL + + +++Lk+ Fs  G +++++i  D     g+s+G + V
     bm03080   106    VFVANLDYKVGWKKLKEVFSMAGVVVRADILED---KDGKSRGIGTV 149  

                   eFedeedAekAldalnGkelggrelrv<-*
                   +Fe++ +A  A++  nG+ l +r+++v   
     bm03080   150 TFEQSIEAVQAISMFNGQLLFDRPMHV    176  

PF00076.12.ls: domain 2 of 2, from 540 to 609: score 90.8, E = 3.8e-24
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      +fV+NLp+d t++ Lkd F+++G ++ ++i+     e+g+skG++ V
     bm03080   540    IFVRNLPFDFTWKMLKDKFNECGHVLYADIKM----ENGKSKGCGVV 582  

                   eFedeedAekAldalnGkelggrelrv<-*
                   +Fe++e Ae+A + +nG++l gre+ v   
     bm03080   583 KFESPEVAERACRMMNGMKLSGREIDV    609  

PF00076.12.fs: domain 3 of 3, from 540 to 609: score 88.9, E = 3.6e-24
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      +fV+NLp+d t++ Lkd F+++G ++ ++i+     e+g+skG++ V
     bm03080   540    IFVRNLPFDFTWKMLKDKFNECGHVLYADIKM----ENGKSKGCGVV 582  

                   eFedeedAekAldalnGkelggrelrv<-*
                   +Fe++e Ae+A + +nG++l gre+ v   
     bm03080   583 KFESPEVAERACRMMNGMKLSGREIDV    609  

//