hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-15284754/chunk_1/iprscan-20080807-15284754.nocrc
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Query sequence: bm03080
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00360                                                 177.2    1.6e-48   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00360    1/2     105   177 ..     1   121 []    83.1  3.3e-20
SM00360    2/2     539   610 ..     1   121 []    94.0  1.7e-23

Alignments of top-scoring domains:
SM00360: domain 1 of 2, from 105 to 177: score 83.1, E = 3.3e-20
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                      t+fV NL  +++v ++ L+e+F              s  G vv+++i
     bm03080   105    TVFVANL--DYKVGWKKLKEVF--------------SMAGVVVRADI 135  

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                   + dkd                      Gks+G + V+Fe   +A +A  i
     bm03080   136 LEDKD----------------------GKSRGIGTVTFEQSIEAVQA--I 161  

                   ealnaskGkeledgGrptlglrVe<-*
                   +++n   G+ l   +rp   ++V+   
     bm03080   162 SMFN---GQLL--FDRP---MHVK    177  

SM00360: domain 2 of 2, from 539 to 610: score 94.0, E = 1.7e-23
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                       +fV+NL  p+d t+++L++ F              +++G+v +++i
     bm03080   539    QIFVRNL--PFDFTWKMLKDKF--------------NECGHVLYADI 569  

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                    ++                       +GkskG++ V+Fe++e Ae+A  +
     bm03080   570 KME-----------------------NGKSKGCGVVKFESPEVAERA--C 594  

                   ealnaskGkeledgGrptlglrVe<-*
                   +++n   G++l   Gr+   + V+   
     bm03080   595 RMMN---GMKL--SGRE---IDVR    610  

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