hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090617/iprscan-20090617-23225018/chunk_1/iprscan-20090617-23225018.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: bm03163 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00478.15.ls IMP dehydrogenase / GMP reductase domain 787.6 6.6e-234 1 PF00478.15.fs IMP dehydrogenase / GMP reductase domain 785.6 2.7e-233 1 PF00571.18.ls CBS domain pair 75.0 2.2e-19 1 PF00571.18.fs CBS domain pair 73.0 2.2e-19 1 PF01070.8.fs FMN-dependent dehydrogenase 15.5 0.0002 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00478.15.fs 1/1 40 516 .. 1 370 [] 785.6 2.7e-233 PF00478.15.ls 1/1 40 516 .. 1 370 [] 787.6 6.6e-234 PF00571.18.fs 1/1 124 244 .. 1 114 [] 73.0 2.2e-19 PF00571.18.ls 1/1 124 244 .. 1 114 [] 75.0 2.2e-19 PF01070.8.fs 1/1 370 399 .. 306 335 .. 15.5 0.0002 Alignments of top-scoring domains: PF00478.15.fs: domain 1 of 1, from 40 to 516: score 785.6, E = 2.7e-233 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->egLTFDDVLLlPgrStVlpsrvdVstrrfTkltrnitLniPlVSAaM +gLT++D+L+lPg+ +++ +++V+++ ++lt++itL++PlVS++M bm03163 40 DGLTYNDFLILPGY--IDFTADQVDLT--SALTKKITLKTPLVSSPM 82 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx DTVTEsrMAiAMAreGGiGvIHkNmsieeQaeeVrkVKrf.......... DTVTE+ MAiAMA+ GGiG+IH+N+++e Qa eVrkVK+++ + +++ bm03163 83 DTVTEAGMAIAMALTGGIGFIHHNCTPEFQANEVRKVKKYeqgfitdpvv 132 RF .................................................. +++++ ++ + + +++ + + +++++ +++ + ++++ + ++++ bm03163 133 lspkdrvrdvfeakarhgfcgipitdtgrmgsrlvgiissrdidflkeee 182 RF .................................................. ++ ++ +++++ + + + ++ ++ ++++++ + +++++ bm03163 183 hdcfleeimtkredlvvapagitlkeaneilqrskkgklpivneddelva 232 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ............yPnAskDaqgrLlVgAAvGtrdddleRaeaLveAGvDv +++ +++++yP+AskDa+++Ll+gAA+Gt++dd++R+++L++AGvDv bm03163 233 iiartdlkknrdYPLASKDAKKQLLCGAAIGTHEDDKYRLDLLAQAGVDV 282 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx iViDsAHGHSegviemikriKkkyPdeldViAGNVvTaeaaraLIdAGAD +V+Ds++G+S+++i+mik+iK kyP +l+Vi+GNVvTa++a++LIdAG+D bm03163 283 VVLDSSQGNSIFQINMIKYIKDKYP-NLQVIGGNVVTAAQAKNLIDAGVD 331 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx avKVGIGPGSICTTRiVaGVGvPGWQlTAVyevAeaArklGvPvIADGGI a++VG+G+GSIC+T++V ++G+P Q+TAVy+v+e+Ar +GvPvIADGGI bm03163 332 ALRVGMGSGSICITQEVLACGRP--QATAVYKVSEYARRFGVPVIADGGI 379 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx rysGDIaKALAaGAsaVMlGSlLAGTeEsPGeyiiynGrkyKsYRGMGSl +++G+IaKALA+GAs+VM+GSlLA+T+E+PGey++ +G ++K+YRGMGSl bm03163 380 QNVGHIAKALALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKYRGMGSL 429 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx gAMekrgkgehkGskdRYfqegvkdkklVPeGveGrVPyKGsvsdtihql +AM+k h s++RYf+e+ dk++V++Gv+G+V++KGs+++++++l bm03163 430 DAMDK-----HLSSQNRYFSEA--DKIKVAQGVSGAVQDKGSIHKFVPYL 472 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx vgGLRssmgYvGaaslkeLrekaysgevrffVRitsAglrEshvH<-* + G+++s++++Ga+sl++ r ++ysge++f+ R++sA++ E++vH bm03163 473 IAGIQHSCQDIGAKSLTQVRAMMYSGELKFEKRTSSAQV-EGGVH 516 PF00478.15.ls: domain 1 of 1, from 40 to 516: score 787.6, E = 6.6e-234 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->egLTFDDVLLlPgrStVlpsrvdVstrrfTkltrnitLniPlVSAaM +gLT++D+L+lPg+ +++ +++V+++ ++lt++itL++PlVS++M bm03163 40 DGLTYNDFLILPGY--IDFTADQVDLT--SALTKKITLKTPLVSSPM 82 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx DTVTEsrMAiAMAreGGiGvIHkNmsieeQaeeVrkVKrf.......... DTVTE+ MAiAMA+ GGiG+IH+N+++e Qa eVrkVK+++ + +++ bm03163 83 DTVTEAGMAIAMALTGGIGFIHHNCTPEFQANEVRKVKKYeqgfitdpvv 132 RF .................................................. +++++ ++ + + +++ + + +++++ +++ + ++++ + ++++ bm03163 133 lspkdrvrdvfeakarhgfcgipitdtgrmgsrlvgiissrdidflkeee 182 RF .................................................. ++ ++ +++++ + + + ++ ++ ++++++ + +++++ bm03163 183 hdcfleeimtkredlvvapagitlkeaneilqrskkgklpivneddelva 232 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ............yPnAskDaqgrLlVgAAvGtrdddleRaeaLveAGvDv +++ +++++yP+AskDa+++Ll+gAA+Gt++dd++R+++L++AGvDv bm03163 233 iiartdlkknrdYPLASKDAKKQLLCGAAIGTHEDDKYRLDLLAQAGVDV 282 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx iViDsAHGHSegviemikriKkkyPdeldViAGNVvTaeaaraLIdAGAD +V+Ds++G+S+++i+mik+iK kyP +l+Vi+GNVvTa++a++LIdAG+D bm03163 283 VVLDSSQGNSIFQINMIKYIKDKYP-NLQVIGGNVVTAAQAKNLIDAGVD 331 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx avKVGIGPGSICTTRiVaGVGvPGWQlTAVyevAeaArklGvPvIADGGI a++VG+G+GSIC+T++V ++G+P Q+TAVy+v+e+Ar +GvPvIADGGI bm03163 332 ALRVGMGSGSICITQEVLACGRP--QATAVYKVSEYARRFGVPVIADGGI 379 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx rysGDIaKALAaGAsaVMlGSlLAGTeEsPGeyiiynGrkyKsYRGMGSl +++G+IaKALA+GAs+VM+GSlLA+T+E+PGey++ +G ++K+YRGMGSl bm03163 380 QNVGHIAKALALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKYRGMGSL 429 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx gAMekrgkgehkGskdRYfqegvkdkklVPeGveGrVPyKGsvsdtihql +AM+k h s++RYf+e+ dk++V++Gv+G+V++KGs+++++++l bm03163 430 DAMDK-----HLSSQNRYFSEA--DKIKVAQGVSGAVQDKGSIHKFVPYL 472 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx vgGLRssmgYvGaaslkeLrekaysgevrffVRitsAglrEshvH<-* + G+++s++++Ga+sl++ r ++ysge++f+ R++sA++ E++vH bm03163 473 IAGIQHSCQDIGAKSLTQVRAMMYSGELKFEKRTSSAQV-EGGVH 516 PF00571.18.fs: domain 1 of 1, from 124 to 244: score 73.0, E = 2.2e-19 RF xxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxx xxxxxxxx *->dvmtkdvvtvdpedttl.ealklmrengisrlPVvd...edgklvGi + ++d+v+++p + ++++++ +++g+ ++P++d+++ + +lvGi bm03163 124 QGFITDPVVLSP-KDRVrDVFEAKARHGFCGIPITDtgrMGSRLVGI 169 RF xxxxxxxxxxx xxxxxxxxx xxxxxxxxxxxx xxxxxxxxxx vterDlllral.....tpvsdiMtr..pPvitvppdtsl.ealelmlehg ++ rD + + +++++ +++iMt++++ ++++p+ +l+ea e++++ + bm03163 170 ISSRD-IDFLKeeehdCFLEEIMTKreD-LVVAPAGITLkEANEILQRSK 217 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxx irhrrlpVvDedgklvGivtreDilrala<-* + lp+v+ed++lv i+ r+D+ + bm03163 218 KG-K-LPIVNEDDELVAIIARTDLKKNRD 244 PF00571.18.ls: domain 1 of 1, from 124 to 244: score 75.0, E = 2.2e-19 RF xxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxx xxxxxxxx *->dvmtkdvvtvdpedttl.ealklmrengisrlPVvd...edgklvGi + ++d+v+++p + ++++++ +++g+ ++P++d+++ + +lvGi bm03163 124 QGFITDPVVLSP-KDRVrDVFEAKARHGFCGIPITDtgrMGSRLVGI 169 RF xxxxxxxxxxx xxxxxxxxx xxxxxxxxxxxx xxxxxxxxxx vterDlllral.....tpvsdiMtr..pPvitvppdtsl.ealelmlehg ++ rD + + +++++ +++iMt++++ ++++p+ +l+ea e++++ + bm03163 170 ISSRD-IDFLKeeehdCFLEEIMTKreD-LVVAPAGITLkEANEILQRSK 217 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxx irhrrlpVvDedgklvGivtreDilrala<-* + lp+v+ed++lv i+ r+D+ + bm03163 218 KG-K-LPIVNEDDELVAIIARTDLKKNRD 244 PF01070.8.fs: domain 1 of 1, from 370 to 399: score 15.5, E = 0.0002 *->dieVllDgGvRRGtDVlKALALGArgVgLG<-* +++V++DgG+ + ++ KALALGA++V+ G bm03163 370 GVPVIADGGIQNVGHIAKALALGASTVMMG 399 //