hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090617/iprscan-20090617-23225018/chunk_1/iprscan-20090617-23225018.nocrc
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Query sequence: bm03163
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00116                                                  81.2    1.3e-19   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00116    1/2     129   180 ..     1    47 []    38.0  1.2e-06
SM00116    2/2     196   244 ..     1    47 []    43.2  3.5e-08

Alignments of top-scoring domains:
SM00116: domain 1 of 2, from 129 to 180: score 38.0, E = 1.2e-06
                   *->dvvtvspdttleealelmrehgirrlPVVd.....gkLvGIvtrrDi
                      d+v+ sp +++++++e   +hg+ ++P++d+++ + +LvGI++ rDi
     bm03163   129    DPVVLSPKDRVRDVFEAKARHGFCGIPITDtgrmgSRLVGIISSRDI 175  

                   lkala<-*
                     + +   
     bm03163   176 DFLKE    180  

SM00116: domain 2 of 2, from 196 to 244: score 43.2, E = 3.5e-08
                   *->dvvtvspdttleealelmrehgirrlPVVd..gkLvGIvtrrDilka
                      d+v+ +++ tl ea e++ + + + lP+V+++++Lv I++r+D++k+
     bm03163   196    DLVVAPAGITLKEANEILQRSKKGKLPIVNedDELVAIIARTDLKKN 242  

                   la<-*
                   ++   
     bm03163   243 RD    244  

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