hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090416/iprscan-20090416-11213746/chunk_1/iprscan-20090416-11213746.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: bm03166
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
PF00106.15.fs short chain dehydrogenase                      52.1    4.3e-14   2
PF00106.15.ls short chain dehydrogenase                      48.6    1.9e-11   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
PF00106.15.fs   1/2      89   112 ..     1    25 [.    17.2  0.00021
PF00106.15.ls   1/1      89   260 ..     1   181 []    48.6  1.9e-11
PF00106.15.fs   2/2     172   260 ..    89   181 .]    34.9  2.6e-09

Alignments of top-scoring domains:
PF00106.15.fs: domain 1 of 2, from 89 to 112: score 17.2, E = 0.00021
                   *->GTvLiTGGtGGLGlavARwLvaeHG<-*
                      ++vL+TG+ +G+G  +A++L  + G   
     bm03166    89    KAVLVTGCDSGFGFSLAKHLHSK-G    112  

PF00106.15.ls: domain 1 of 1, from 89 to 260: score 48.6, E = 1.9e-11
                   *->GTvLiTGGtGGLGlavARwLvaeHGArhLvLvsRrGpdapgaaeLrr
                      ++vL+TG+ +G+G  +A++L  + G  + + +        g   +  
     bm03166    89    KAVLVTGCDSGFGFSLAKHLHSK-GFLVFAGCLMK---DKGHDGV-- 129  

                   iavaeLealG.aeVtvaacDVaDrdalaallaaipk...aaegPLtgVVH
                      +eL  l + + + ++  V + ++++++++ ++++ +++e   +g+V+
     bm03166   130 ---KELDSLNsDRLRTVQLNVCSSEEVEKVVEIVRSslkDPEKGMWGLVN 176  

                   aAGvldDgvlesltperldaVlapKvdgAwhLheltrdlmikldrkeLda
                   +AG+   g +e ++ e + +V  +++ g++ +++ +++ +i +     ++
     bm03166   177 NAGISTFGEVEFTSLETYKQVAEVNLWGTVRMTKSFLP-LIRRA---KGR 222  

                   FVlfSSaAGvlGspGQanYAAANAfLDaLAehRraeGL<-*
                   +V++SS+ G + +p  + Y   +++++a+   +r e     
     bm03166   223 VVNISSMLGRMANPARSPYCITKFGVEAFSDCLRYEMY    260  

PF00106.15.fs: domain 2 of 2, from 172 to 260: score 34.9, E = 2.6e-09
                   *->tgVVHaAGvldDgvlesltperldaVlapKvdgAwhLheltrdlmik
                      +g+V++AG+   g +e ++ e + +V  +++ g++ +++ +++ +i 
     bm03166   172    WGLVNNAGISTFGEVEFTSLETYKQVAEVNLWGTVRMTKSFLP-LIR 217  

                   ldrkeLdaFVlfSSaAGvlGspGQanYAAANAfLDaLAehRraeGL<-*
                   +     +++V++SS+ G + +p  + Y   +++++a+   +r e     
     bm03166   218 RA---KGRVVNISSMLGRMANPARSPYCITKFGVEAFSDCLRYEMY    260  

//