hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080807/iprscan-20080807-15402998/chunk_1/iprscan-20080807-15402998.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: bm03184 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00023.20.ls Ankyrin repeat 211.6 1.6e-60 9 PF00023.20.fs Ankyrin repeat 208.1 1.9e-59 9 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00023.20.ls 1/9 19 51 .. 1 33 [] 10.2 0.96 PF00023.20.fs 1/9 26 51 .. 8 33 .] 14.0 0.0066 PF00023.20.ls 2/9 52 84 .. 1 33 [] 14.0 0.27 PF00023.20.fs 2/9 52 80 .. 1 29 [. 12.2 0.021 PF00023.20.ls 3/9 88 120 .. 1 33 [] 42.9 9.8e-10 PF00023.20.fs 3/9 88 120 .. 1 33 [] 41.0 2e-10 PF00023.20.ls 4/9 121 153 .. 1 33 [] 30.5 5.5e-06 PF00023.20.fs 4/9 121 149 .. 1 29 [. 29.9 2.4e-07 PF00023.20.ls 5/9 155 187 .. 1 33 [] 31.7 2.3e-06 PF00023.20.fs 5/9 155 187 .. 1 33 [] 29.7 2.6e-07 PF00023.20.fs 6/9 188 220 .. 1 33 [] 26.8 1.7e-06 PF00023.20.ls 6/9 188 220 .. 1 33 [] 28.8 1.8e-05 PF00023.20.fs 7/9 221 253 .. 1 33 [] 31.8 7.1e-08 PF00023.20.ls 7/9 221 253 .. 1 33 [] 33.8 5.6e-07 PF00023.20.ls 8/9 256 285 .. 1 33 [] 1.1 20 PF00023.20.fs 8/9 260 277 .. 5 22 .. 6.3 0.92 PF00023.20.fs 9/9 289 321 .. 1 33 [] 16.6 0.0012 PF00023.20.ls 9/9 289 321 .. 1 33 [] 18.6 0.021 Alignments of top-scoring domains: PF00023.20.ls: domain 1 of 9, from 19 to 51: score 10.2, E = 0.96 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* d ++ lAa+ gn++v++ Ll++G ++++ d+ bm03184 19 DTCSTVGLAAREGNVKVLRKLLKKGRSVDVADN 51 PF00023.20.fs: domain 1 of 9, from 26 to 51: score 14.0, E = 0.0066 *->lAalrgnlevvklLlsqGAdlnaqdd<-* lAa+ gn++v++ Ll++G ++++ d+ bm03184 26 LAAREGNVKVLRKLLKKGRSVDVADN 51 PF00023.20.ls: domain 2 of 9, from 52 to 84: score 14.0, E = 0.27 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G+ P+H Aa+++++e++++L+++ + n bm03184 52 RGWMPIHEAAYHNSVECLQMLINADSSENYIKM 84 PF00023.20.fs: domain 2 of 9, from 52 to 80: score 12.2, E = 0.021 *->dGfTPLHlAalrgnlevvklLlsqGAdln<-* G+ P+H Aa+++++e++++L+++ + n bm03184 52 RGWMPIHEAAYHNSVECLQMLINADSSEN 80 PF00023.20.ls: domain 3 of 9, from 88 to 120: score 42.9, E = 9.8e-10 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +Gf +LHlAa+ g+ ++v+ Ll++GAd+na++ bm03184 88 EGFCALHLAASQGHWKIVQILLEAGADPNATTL 120 PF00023.20.fs: domain 3 of 9, from 88 to 120: score 41.0, E = 2e-10 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +Gf +LHlAa+ g+ ++v+ Ll++GAd+na++ bm03184 88 EGFCALHLAASQGHWKIVQILLEAGADPNATTL 120 PF00023.20.ls: domain 4 of 9, from 121 to 153: score 30.5, E = 5.5e-06 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* + TPL lA+++g+++v++lLl++GA++n bm03184 121 EETTPLFLAVENGQIDVLRLLLQHGANVNGSHS 153 PF00023.20.fs: domain 4 of 9, from 121 to 149: score 29.9, E = 2.4e-07 *->dGfTPLHlAalrgnlevvklLlsqGAdln<-* + TPL lA+++g+++v++lLl++GA++n bm03184 121 EETTPLFLAVENGQIDVLRLLLQHGANVN 149 PF00023.20.ls: domain 5 of 9, from 155 to 187: score 31.7, E = 2.3e-06 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+ LH A++ n+e++klLl +GA+ qdd bm03184 155 CGWNSLHQASFQENAEIIKLLLRKGANKECQDD 187 PF00023.20.fs: domain 5 of 9, from 155 to 187: score 29.7, E = 2.6e-07 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* +G+ LH A++ n+e++klLl +GA+ qdd bm03184 155 CGWNSLHQASFQENAEIIKLLLRKGANKECQDD 187 PF00023.20.fs: domain 6 of 9, from 188 to 220: score 26.8, E = 1.7e-06 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G TPL +Aa++g le ++ L+s GA++n q bm03184 188 FGITPLFVAAQYGKLESLSILISSGANVNCQAL 220 PF00023.20.ls: domain 6 of 9, from 188 to 220: score 28.8, E = 1.8e-05 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* G TPL +Aa++g le ++ L+s GA++n q bm03184 188 FGITPLFVAAQYGKLESLSILISSGANVNCQAL 220 PF00023.20.fs: domain 7 of 9, from 221 to 253: score 31.8, E = 7.1e-08 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* d TPL +Aa+ g++++v+lLls GAd+++ + bm03184 221 DKATPLFIAAQEGHTKCVELLLSSGADPDLYCN 253 PF00023.20.ls: domain 7 of 9, from 221 to 253: score 33.8, E = 5.6e-07 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* d TPL +Aa+ g++++v+lLls GAd+++ + bm03184 221 DKATPLFIAAQEGHTKCVELLLSSGADPDLYCN 253 PF00023.20.ls: domain 8 of 9, from 256 to 285: score 1.1, E = 20 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* + P+H Aa++g+++++ lL+ n d bm03184 256 SWQLPIHAAAQMGHTKILDLLIP---LTNRACD 285 PF00023.20.fs: domain 8 of 9, from 260 to 277: score 6.3, E = 0.92 *->PLHlAalrgnlevvklLl<-* P+H Aa++g+++++ lL+ bm03184 260 PIHAAAQMGHTKILDLLI 277 PF00023.20.fs: domain 9 of 9, from 289 to 321: score 16.6, E = 0.0012 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* + +P A++ g++++++ Ll +G +++aq bm03184 289 NKVSPVYSAVFGGHEDCLEILLRNGYSPDAQAC 321 PF00023.20.ls: domain 9 of 9, from 289 to 321: score 18.6, E = 0.021 *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-* + +P A++ g++++++ Ll +G +++aq bm03184 289 NKVSPVYSAVFGGHEDCLEILLRNGYSPDAQAC 321 //