hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080807/iprscan-20080807-15460012/chunk_1/iprscan-20080807-15460012.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: bm03192 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01344.15.ls Kelch motif 199.7 6.3e-57 5 PF01344.15.fs Kelch motif 189.7 6.6e-54 5 PF00651.21.fs BTB/POZ domain 126.2 8.6e-35 2 PF00651.21.ls BTB/POZ domain 120.1 5.9e-33 1 PF07646.5.ls Kelch motif 104.4 3.1e-28 5 PF07646.5.fs Kelch motif 95.0 2.2e-25 5 PF07707.5.fs BTB And C-terminal Kelch 55.3 2.7e-14 2 PF07707.5.ls BTB And C-terminal Kelch 52.3 1.5e-12 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00651.21.ls 1/1 50 157 .. 1 135 [] 120.1 5.9e-33 PF00651.21.fs 1/2 50 153 .. 1 131 [. 117.2 3.4e-32 PF07707.5.fs 1/2 162 225 .. 1 64 [. 45.7 1.1e-11 PF07707.5.ls 1/1 162 268 .. 1 103 [] 52.3 1.5e-12 PF01344.15.ls 1/5 348 396 .. 1 45 [] 40.6 4.8e-09 PF01344.15.fs 1/5 348 396 .. 1 45 [] 38.6 3.8e-10 PF01344.15.ls 2/5 398 443 .. 1 45 [] 50.2 6.6e-12 PF07646.5.fs 2/5 398 443 .. 1 54 [] 23.3 1.7e-05 PF01344.15.fs 2/5 398 443 .. 1 45 [] 48.2 7.5e-13 PF07646.5.ls 2/5 398 443 .. 1 54 [] 25.2 0.00021 PF01344.15.ls 3/5 445 490 .. 1 45 [] 35.8 1.4e-07 PF07646.5.fs 3/5 445 490 .. 1 54 [] 20.1 0.00013 PF01344.15.fs 3/5 445 490 .. 1 45 [] 33.8 8.9e-09 PF07646.5.ls 3/5 445 490 .. 1 54 [] 22.0 0.002 PF07646.5.ls 4/5 492 541 .. 1 54 [] 15.6 0.17 PF01344.15.ls 4/5 492 541 .. 1 45 [] 37.2 5.4e-08 PF01344.15.fs 4/5 492 541 .. 1 45 [] 35.1 3.7e-09 PF07646.5.fs 5/5 543 590 .. 1 54 [] 32.0 7.8e-08 PF01344.15.fs 5/5 543 590 .. 1 45 [] 33.9 8.2e-09 PF07646.5.ls 5/5 543 590 .. 1 54 [] 33.9 5.3e-07 PF01344.15.ls 5/5 543 590 .. 1 45 [] 35.9 1.3e-07 Alignments of top-scoring domains: PF00651.21.ls: domain 1 of 1, from 50 to 157: score 120.1, E = 5.9e-33 *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal l +lr++g+l DV+Lvv+ g+++ AH+ Laa+ +YF+ + bm03192 50 LLALRDSGILFDVVLVVE--------GRHIEAHRILLAASCDYFRGM 88 FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks F g+ +e++++ e+ + +vs+ +++++L+fiYt+el+++ bm03192 89 FAGG------LKEMEQE-EVLIHGVSYNAMCQILHFIYTSELELS----- 126 PssckseenvedlLaaAadllqipslvdaCeefliksl<-* ++nv++ L aA + lqip +++ C++fl bm03192 127 ------LSNVQETLVAA-CQLQIPEIIHFCCDFLMSWV 157 PF00651.21.fs: domain 1 of 2, from 50 to 153: score 117.2, E = 3.4e-32 *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal l +lr++g+l DV+Lvv+ g+++ AH+ Laa+ +YF+ + bm03192 50 LLALRDSGILFDVVLVVE--------GRHIEAHRILLAASCDYFRGM 88 FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks F g+ +e++++ e+ + +vs+ +++++L+fiYt+el+++ bm03192 89 FAGG------LKEMEQE-EVLIHGVSYNAMCQILHFIYTSELELS----- 126 PssckseenvedlLaaAadllqipslvdaCeefl<-* ++nv++ L aA + lqip +++ C++fl bm03192 127 ------LSNVQETLVAA-CQLQIPEIIHFCCDFL 153 PF07707.5.fs: domain 1 of 2, from 162 to 225: score 45.7, E = 1.1e-11 *->CLgIrrfAdaygceeLaeaAdrfilqnFleVakseEFlqLskeqLie L+++r+A+ + +++L e+ d +il+nF+++++++ qL++e++ + bm03192 162 ILDVYRLAELFDLSRLTEQLDTYILKNFVAFSRTDKYRQLPLEKVYS 208 lLssDeLnVpsEeeVfe<-* lLss++L V +E eV+e bm03192 209 LLSSNRLEVSCETEVYE 225 PF07707.5.ls: domain 1 of 1, from 162 to 268: score 52.3, E = 1.5e-12 *->CLgIrrfAdaygceeLaeaAdrfilqnFleVakseEFlqLskeqLie L+++r+A+ + +++L e+ d +il+nF+++++++ qL++e++ + bm03192 162 ILDVYRLAELFDLSRLTEQLDTYILKNFVAFSRTDKYRQLPLEKVYS 208 lLssDeLnVpsEeeVfeAvmrW......vkhdvenRkkhlpeLLshVRLp lLss++L V +E eV+e ++ + + ++v+ d+ p+LL+ VR+p bm03192 209 LLSSNRLEVSCETEVYEGALLYhysleqVQADQI-SLHEPPKLLETVRFP 257 LLspkyLlevve<-* L+ + L++ ++ bm03192 258 LMEAEVLQR-LH 268 PF01344.15.ls: domain 1 of 5, from 348 to 396: score 40.6, E = 4.8e-09 *->pRsgagvvvldgkiYviGGydg....qslnsvevYDpetntWtklps + s+ g++vl++ +Y iGG ++ ++ ++ + +++YDp+ n+W ++ s bm03192 348 RMSNQGIAVLNNFVYLIGGDNNvqgfRAESRCWRYDPRHNRWFQIQS 394 mp<-* ++ bm03192 395 LQ 396 PF01344.15.fs: domain 1 of 5, from 348 to 396: score 38.6, E = 3.8e-10 *->pRsgagvvvldgkiYviGGydg....qslnsvevYDpetntWtklps + s+ g++vl++ +Y iGG ++ ++ ++ + +++YDp+ n+W ++ s bm03192 348 RMSNQGIAVLNNFVYLIGGDNNvqgfRAESRCWRYDPRHNRWFQIQS 394 mp<-* ++ bm03192 395 LQ 396 PF01344.15.ls: domain 2 of 5, from 398 to 443: score 50.2, E = 6.6e-12 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< + +v+v++ +iY++ G+d ++ ln ve+YDp tn+W ++++++ bm03192 398 EHADLSVCVVGRYIYAVAGRDYhNDLNAVERYDPATNSWAYVAPLK 443 -* bm03192 - - PF07646.5.fs: domain 2 of 5, from 398 to 443: score 23.3, E = 1.7e-05 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW ++ +++v+g +y v G+ + +++ + ++dp tn+W bm03192 398 EHADLSVCVVGRYIYAVAGR--------DYHNDLNAVERYDPATNSW 436 eklpalp<-* ++++l+ bm03192 437 AYVAPLK 443 PF01344.15.fs: domain 2 of 5, from 398 to 443: score 48.2, E = 7.5e-13 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< + +v+v++ +iY++ G+d ++ ln ve+YDp tn+W ++++++ bm03192 398 EHADLSVCVVGRYIYAVAGRDYhNDLNAVERYDPATNSWAYVAPLK 443 -* bm03192 - - PF07646.5.ls: domain 2 of 5, from 398 to 443: score 25.2, E = 0.00021 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW ++ +++v+g +y v G+ + +++ + ++dp tn+W bm03192 398 EHADLSVCVVGRYIYAVAGR--------DYHNDLNAVERYDPATNSW 436 eklpalp<-* ++++l+ bm03192 437 AYVAPLK 443 PF01344.15.ls: domain 3 of 5, from 445 to 490: score 35.8, E = 1.4e-07 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< + ++ ++l+gk+Y++ G+ g+ +l+ +YDp +ntW+ l++ p bm03192 445 EVYAHAGATLEGKMYITCGRRGeDYLKETHCYDPGSNTWHTLADGP 490 -* bm03192 - - PF07646.5.fs: domain 3 of 5, from 445 to 490: score 20.1, E = 0.00013 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW y ha ++++gk+y+ +G+ +g +++ +++dp +n+W bm03192 445 EVYAHAGATLEGKMYITCGR--------RGEDYLKETHCYDPGSNTW 483 eklpalp<-* + l++ p bm03192 484 HTLADGP 490 PF01344.15.fs: domain 3 of 5, from 445 to 490: score 33.8, E = 8.9e-09 *->pRsgagvvvldgkiYviGGydg.qslnsvevYDpetntWtklpsmp< + ++ ++l+gk+Y++ G+ g+ +l+ +YDp +ntW+ l++ p bm03192 445 EVYAHAGATLEGKMYITCGRRGeDYLKETHCYDPGSNTWHTLADGP 490 -* bm03192 - - PF07646.5.ls: domain 3 of 5, from 445 to 490: score 22.0, E = 0.002 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW y ha ++++gk+y+ +G+ +g +++ +++dp +n+W bm03192 445 EVYAHAGATLEGKMYITCGR--------RGEDYLKETHCYDPGSNTW 483 eklpalp<-* + l++ p bm03192 484 HTLADGP 490 PF07646.5.ls: domain 4 of 5, from 492 to 541: score 15.6, E = 0.17 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdll...vldpet +r+ h ++++ +klyv+GGs n++ + +d+++ ++ + + bm03192 492 RRAWHGMATLLNKLYVIGGS-------NNDAGYRRDVHqvaCYSCTS 531 nvWeklpalp<-* +W+ +++lp bm03192 532 GQWSSVCPLP 541 PF01344.15.ls: domain 4 of 5, from 492 to 541: score 37.2, E = 5.4e-08 *->pRsgagvvvldgkiYviGGydg.....qslnsvevYDpetntWtklp +R+ +g+++l +k+YviGG++++ + ++ + v +Y++++++W+ + bm03192 492 RRAWHGMATLLNKLYVIGGSNNdagyrRDVHQVACYSCTSGQWSSVC 538 smp<-* ++p bm03192 539 PLP 541 PF01344.15.fs: domain 4 of 5, from 492 to 541: score 35.1, E = 3.7e-09 *->pRsgagvvvldgkiYviGGydg.....qslnsvevYDpetntWtklp +R+ +g+++l +k+YviGG++++ + ++ + v +Y++++++W+ + bm03192 492 RRAWHGMATLLNKLYVIGGSNNdagyrRDVHQVACYSCTSGQWSSVC 538 smp<-* ++p bm03192 539 PLP 541 PF07646.5.fs: domain 5 of 5, from 543 to 590: score 32.0, E = 7.8e-08 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +++ ++v+++++yv GG+ ++n ++++ ++++d e+ +W bm03192 543 GHGEPGIAVLDNRIYVLGGR------SHNRGSRTGYVHIYDVEKDCW 583 eklpalp<-* e+ p+l+ bm03192 584 EEGPQLD 590 PF01344.15.fs: domain 5 of 5, from 543 to 590: score 33.9, E = 8.2e-09 *->pRsgagvvvldgkiYviGGydg...qslnsvevYDpetntWtklpsm g++vld++iYv GG++ ++++++ v +YD+e+++W+++p + bm03192 543 GHGEPGIAVLDNRIYVLGGRSHnrgSRTGYVHIYDVEKDCWEEGPQL 589 p<-* bm03192 590 D 590 PF07646.5.ls: domain 5 of 5, from 543 to 590: score 33.9, E = 5.3e-07 *->pryphasvvpggklyvvGGsfkgnrgtgngdesssdllvldpetnvW +++ ++v+++++yv GG+ ++n ++++ ++++d e+ +W bm03192 543 GHGEPGIAVLDNRIYVLGGR------SHNRGSRTGYVHIYDVEKDCW 583 eklpalp<-* e+ p+l+ bm03192 584 EEGPQLD 590 PF01344.15.ls: domain 5 of 5, from 543 to 590: score 35.9, E = 1.3e-07 *->pRsgagvvvldgkiYviGGydg...qslnsvevYDpetntWtklpsm g++vld++iYv GG++ ++++++ v +YD+e+++W+++p + bm03192 543 GHGEPGIAVLDNRIYVLGGRSHnrgSRTGYVHIYDVEKDCWEEGPQL 589 p<-* bm03192 590 D 590 //