hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080807/iprscan-20080807-15580134/chunk_1/iprscan-20080807-15580134.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: bm03196 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00162.9.ls Phosphoglycerate kinase 1036.5 0 1 PF00162.9.fs Phosphoglycerate kinase 1034.6 0 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00162.9.fs 1/1 39 450 .. 1 422 [] 1034.6 0 PF00162.9.ls 1/1 39 450 .. 1 422 [] 1036.5 0 Alignments of top-scoring domains: PF00162.9.fs: domain 1 of 1, from 39 to 450: score 1034.6, E = 0 *->lsnklsildladlkGKrVLvRVDFNVPlddgkITddqRIraAlPTIk lsnkl+ ++l d+kGKrV +RVDFNVP+++++IT++qRI+aA+P+Ik bm03196 39 LSNKLTLDKL-DVKGKRVVMRVDFNVPMKNNQITNNQRIKAAVPSIK 84 ylldkGAKkviLmSHLGRPkGeknGYeekySLkPVAaeLseLLGkpVtFl +ld+GAK+v+LmSHLGRP+G+++ ++kySL+PVA+eL+ LLGk+V+Fl bm03196 85 FCLDNGAKSVVLMSHLGRPDGVPM--PDKYSLEPVAVELKSLLGKDVLFL 132 dDCvGpeveeavnklkdGdVlLLENlRFypEEegKgkDadGnKVKaDpek +DCvGpeve+a+++++ G+V+LLENlRF++EEegKgkDa+GnKVKa+p+k bm03196 133 KDCVGPEVEKACANPAAGSVILLENLRFHVEEEGKGKDASGNKVKAEPAK 182 qAveaFakkLaslaDVYVNDAFGTAHRahaSmvGvakvLpqkaAGfLmeK +eaF+++L++l+DVYVNDAFGTAHRah+SmvGv+ Lpqka GfLm+K bm03196 183 --IEAFRASLSKLGDVYVNDAFGTAHRAHSSMVGVN--LPQKAGGFLMKK 228 ELeYFaKaLenPeRPflAILGGAKVSDKIqLIeNLLdKvDsLiIGGGMAf EL+YFaKaLe+PeRPflAILGGAKV+DKIqLI+N+LdKv+++iIGGGMAf bm03196 229 ELNYFAKALESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAF 278 TFlKalgnsvGyIGtSlfdeaglkivekLlekAkkknVqivLPvDfVvad TFlK+l+n++ IGtSlfde+g+kiv++L+ kA+k++V+i LPvDfV+ad bm03196 279 TFLKVLNNME--IGTSLFDEEGAKIVKDLMSKAEKNGVKITLPVDFVTAD 326 kFaadAntqvvtdaeGIPDGwMGLDiGPkSikeFaeviakaKTIiWNGPm kF+++A+t+++t+a+GIP GwMGLD+GP+S k++ae++ +aK+I+WNGP+ bm03196 327 KFDENAKTGQATVASGIPAGWMGLDCGPESSKKYAEAVTRAKQIVWNGPV 376 GVFEfpaFAkGTkaildavvkatkkkGatsIIGGGDtAaaaekyGleeki GVFE++aFA+GTka++d+vvkat++ G+++IIGGGDtA++++k+++e+k+ bm03196 377 GVFEWEAFARGTKALMDEVVKATSR-GCITIIGGGDTATCCAKWNTEDKV 425 SHvSTGGGASLELLEGKtLPGVaaL<-* SHvSTGGGASLELLEGK+LPGV+aL bm03196 426 SHVSTGGGASLELLEGKVLPGVDAL 450 PF00162.9.ls: domain 1 of 1, from 39 to 450: score 1036.5, E = 0 *->lsnklsildladlkGKrVLvRVDFNVPlddgkITddqRIraAlPTIk lsnkl+ ++l d+kGKrV +RVDFNVP+++++IT++qRI+aA+P+Ik bm03196 39 LSNKLTLDKL-DVKGKRVVMRVDFNVPMKNNQITNNQRIKAAVPSIK 84 ylldkGAKkviLmSHLGRPkGeknGYeekySLkPVAaeLseLLGkpVtFl +ld+GAK+v+LmSHLGRP+G+++ ++kySL+PVA+eL+ LLGk+V+Fl bm03196 85 FCLDNGAKSVVLMSHLGRPDGVPM--PDKYSLEPVAVELKSLLGKDVLFL 132 dDCvGpeveeavnklkdGdVlLLENlRFypEEegKgkDadGnKVKaDpek +DCvGpeve+a+++++ G+V+LLENlRF++EEegKgkDa+GnKVKa+p+k bm03196 133 KDCVGPEVEKACANPAAGSVILLENLRFHVEEEGKGKDASGNKVKAEPAK 182 qAveaFakkLaslaDVYVNDAFGTAHRahaSmvGvakvLpqkaAGfLmeK +eaF+++L++l+DVYVNDAFGTAHRah+SmvGv+ Lpqka GfLm+K bm03196 183 --IEAFRASLSKLGDVYVNDAFGTAHRAHSSMVGVN--LPQKAGGFLMKK 228 ELeYFaKaLenPeRPflAILGGAKVSDKIqLIeNLLdKvDsLiIGGGMAf EL+YFaKaLe+PeRPflAILGGAKV+DKIqLI+N+LdKv+++iIGGGMAf bm03196 229 ELNYFAKALESPERPFLAILGGAKVADKIQLINNMLDKVNEMIIGGGMAF 278 TFlKalgnsvGyIGtSlfdeaglkivekLlekAkkknVqivLPvDfVvad TFlK+l+n++ IGtSlfde+g+kiv++L+ kA+k++V+i LPvDfV+ad bm03196 279 TFLKVLNNME--IGTSLFDEEGAKIVKDLMSKAEKNGVKITLPVDFVTAD 326 kFaadAntqvvtdaeGIPDGwMGLDiGPkSikeFaeviakaKTIiWNGPm kF+++A+t+++t+a+GIP GwMGLD+GP+S k++ae++ +aK+I+WNGP+ bm03196 327 KFDENAKTGQATVASGIPAGWMGLDCGPESSKKYAEAVTRAKQIVWNGPV 376 GVFEfpaFAkGTkaildavvkatkkkGatsIIGGGDtAaaaekyGleeki GVFE++aFA+GTka++d+vvkat++ G+++IIGGGDtA++++k+++e+k+ bm03196 377 GVFEWEAFARGTKALMDEVVKATSR-GCITIIGGGDTATCCAKWNTEDKV 425 SHvSTGGGASLELLEGKtLPGVaaL<-* SHvSTGGGASLELLEGK+LPGV+aL bm03196 426 SHVSTGGGASLELLEGKVLPGVDAL 450 //