hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090617/iprscan-20090617-23290965/chunk_1/iprscan-20090617-23290965.nocrc
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Query sequence: bm03209
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00503.10.ls G-protein alpha subunit                        866.3   1.4e-257   1
PF00503.10.fs G-protein alpha subunit                        864.4     5e-257   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00503.10.fs   1/1      42   389 ..     1   361 []   864.4   5e-257
PF00503.10.ls   1/1      42   389 ..     1   361 []   866.3 1.4e-257

Alignments of top-scoring domains:
PF00503.10.fs: domain 1 of 1, from 42 to 389: score 864.4, E = 5e-257
                   *->seeekeqakrnkeIekqLkqekkkakrevKLLLLGAGESGKSTIlKQ
                      s+ee+++ +r+k+Iek Lk+++ +a+++vKLLLLGAGESGKSTI+KQ
     bm03209    42    SAEERAALERSKAIEKNLKEDGISAAKDVKLLLLGAGESGKSTIVKQ 88   

                   MKIIHgnGFSqEEkkeyrpvIyqNivqsmrvlvdAmetLgIpfgdperen
                   MKIIH++GFS E+ k+y+pv+y+N++qs+ ++v+Am+tLgI++gd er  
     bm03209    89 MKIIHEDGFSGEDVKQYKPVVYSNTIQSLAAIVRAMDTLGIEYGDKER-- 136  

                   SeadavmiietaseteeeeplpkeyadaikaLWkDpGiqecfdRsnEfqL
                    +ada+m++++ s +e+ ep+++e++ a+++LW D+Giqecf+Rs+E+qL
     bm03209   137 -KADAKMVCDVVSRMEDTEPFSAELLSAMMRLWGDSGIQECFNRSREYQL 185  

                   nDSAkYFLdnldRisdpdYiPTeQDILrsRvkTTGIvEtkFsvkkltFRM
                   nDSAkY+Ld+ldRi+++dY PTeQDILr+RvkTTGIvEt+F++k+l+FR+
     bm03209   186 NDSAKYYLDSLDRIGAADYQPTEQDILRTRVKTTGIVETHFTFKNLHFRL 235  

                   fDVGGQRSERKKWIHCFEdVTAIIFlVALSEYDQvLfEDettNRMqESLk
                   fDVGGQRSERKKWIHCFEdVTAIIF+VALS+YDQvL+EDettNRM+ESL+
     bm03209   236 FDVGGQRSERKKWIHCFEDVTAIIFCVALSGYDQVLHEDETTNRMHESLM 285  

                   LFdsIcNnrwFvntSiILFLNKkDLFeEKIkktpshisdyFPeYedyssG
                   LFdsIcNn++F++tSiILFLNKkDLF EKIkk+p  ++++FPeY+    G
     bm03209   286 LFDSICNNKFFIDTSIILFLNKKDLFGEKIKKSP--LTICFPEYT----G 329  

                   ppqdyeaAkeFIkkkFvslnrnnekpkKeIYsHfTCATDTnnIrfVFdaV
                   p ++ye+A+++I+ +F+s+nr+++   KeIY+H+TCATDTnnI++VFdaV
     bm03209   330 P-NTYEDAAAYIQAQFESKNRSPN---KEIYCHMTCATDTNNIQVVFDAV 375  

                   kDiIlqenLkecGL<-*
                   +DiI+ +nL++cGL   
     bm03209   376 TDIIIANNLRGCGL    389  

PF00503.10.ls: domain 1 of 1, from 42 to 389: score 866.3, E = 1.4e-257
                   *->seeekeqakrnkeIekqLkqekkkakrevKLLLLGAGESGKSTIlKQ
                      s+ee+++ +r+k+Iek Lk+++ +a+++vKLLLLGAGESGKSTI+KQ
     bm03209    42    SAEERAALERSKAIEKNLKEDGISAAKDVKLLLLGAGESGKSTIVKQ 88   

                   MKIIHgnGFSqEEkkeyrpvIyqNivqsmrvlvdAmetLgIpfgdperen
                   MKIIH++GFS E+ k+y+pv+y+N++qs+ ++v+Am+tLgI++gd er  
     bm03209    89 MKIIHEDGFSGEDVKQYKPVVYSNTIQSLAAIVRAMDTLGIEYGDKER-- 136  

                   SeadavmiietaseteeeeplpkeyadaikaLWkDpGiqecfdRsnEfqL
                    +ada+m++++ s +e+ ep+++e++ a+++LW D+Giqecf+Rs+E+qL
     bm03209   137 -KADAKMVCDVVSRMEDTEPFSAELLSAMMRLWGDSGIQECFNRSREYQL 185  

                   nDSAkYFLdnldRisdpdYiPTeQDILrsRvkTTGIvEtkFsvkkltFRM
                   nDSAkY+Ld+ldRi+++dY PTeQDILr+RvkTTGIvEt+F++k+l+FR+
     bm03209   186 NDSAKYYLDSLDRIGAADYQPTEQDILRTRVKTTGIVETHFTFKNLHFRL 235  

                   fDVGGQRSERKKWIHCFEdVTAIIFlVALSEYDQvLfEDettNRMqESLk
                   fDVGGQRSERKKWIHCFEdVTAIIF+VALS+YDQvL+EDettNRM+ESL+
     bm03209   236 FDVGGQRSERKKWIHCFEDVTAIIFCVALSGYDQVLHEDETTNRMHESLM 285  

                   LFdsIcNnrwFvntSiILFLNKkDLFeEKIkktpshisdyFPeYedyssG
                   LFdsIcNn++F++tSiILFLNKkDLF EKIkk+p  ++++FPeY+    G
     bm03209   286 LFDSICNNKFFIDTSIILFLNKKDLFGEKIKKSP--LTICFPEYT----G 329  

                   ppqdyeaAkeFIkkkFvslnrnnekpkKeIYsHfTCATDTnnIrfVFdaV
                   p ++ye+A+++I+ +F+s+nr+++   KeIY+H+TCATDTnnI++VFdaV
     bm03209   330 P-NTYEDAAAYIQAQFESKNRSPN---KEIYCHMTCATDTNNIQVVFDAV 375  

                   kDiIlqenLkecGL<-*
                   +DiI+ +nL++cGL   
     bm03209   376 TDIIIANNLRGCGL    389  

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