hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080807/iprscan-20080807-16041396/chunk_1/iprscan-20080807-16041396.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: bm03222 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00149.18.ls Calcineurin-like phosphoesterase 141.0 3e-39 1 PF00149.18.fs Calcineurin-like phosphoesterase 139.0 1.2e-38 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00149.18.fs 1/1 96 291 .. 1 124 [] 139.0 1.2e-38 PF00149.18.ls 1/1 96 291 .. 1 124 [] 141.0 3e-39 Alignments of top-scoring domains: PF00149.18.fs: domain 1 of 1, from 96 to 291: score 139.0, E = 1.2e-38 *->mrilvigDlHggfedlllllela.e.kpdlvlflGDlvdrgppslev +++v+gD+Hg+f+dl++l++++++++++++lf+GD+vdrg++s e+ bm03222 96 CPVTVCGDVHGQFHDLMELFRIGgKsPDTNYLFMGDYVDRGYYSVET 142 llllfalklkapgpvylvrGNHDfdsgnsvl...............w.ef + ll+alk+++ ++ ++rGNH+++++++v+++++ +++++ + w++f bm03222 143 VTLLVALKVRYRERITILRGNHESRQITQVYgfydeclrkygnanvWkYF 192 lell.lllla.lvdgkillvHgplspd....................... +l+++l+l lvdg i++ Hg+lsp+ + ++ + ++ + +++++ bm03222 193 TDLFdYLPLTaLVDGQIFCLHGGLSPSidtldhiraldrlqevphegpmc 242 ............................leellk.ngvdlvirGHtHvp< + +++++++++++ ++++ + + + e + ng+ lv r+H+ v+ bm03222 243 dllwsdpddrggwgisprgagytfgqdiSETFNHaNGLTLVSRAHQLVM 291 -* bm03222 - - PF00149.18.ls: domain 1 of 1, from 96 to 291: score 141.0, E = 3e-39 *->mrilvigDlHggfedlllllela.e.kpdlvlflGDlvdrgppslev +++v+gD+Hg+f+dl++l++++++++++++lf+GD+vdrg++s e+ bm03222 96 CPVTVCGDVHGQFHDLMELFRIGgKsPDTNYLFMGDYVDRGYYSVET 142 llllfalklkapgpvylvrGNHDfdsgnsvl...............w.ef + ll+alk+++ ++ ++rGNH+++++++v+++++ +++++ + w++f bm03222 143 VTLLVALKVRYRERITILRGNHESRQITQVYgfydeclrkygnanvWkYF 192 lell.lllla.lvdgkillvHgplspd....................... +l+++l+l lvdg i++ Hg+lsp+ + ++ + ++ + +++++ bm03222 193 TDLFdYLPLTaLVDGQIFCLHGGLSPSidtldhiraldrlqevphegpmc 242 ............................leellk.ngvdlvirGHtHvp< + +++++++++++ ++++ + + + e + ng+ lv r+H+ v+ bm03222 243 dllwsdpddrggwgisprgagytfgqdiSETFNHaNGLTLVSRAHQLVM 291 -* bm03222 - - //