hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090617/iprscan-20090617-23353975/chunk_1/iprscan-20090617-23353975.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: bm03295 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00012.10.ls Hsp70 protein 1407.7 0 1 PF00012.10.fs Hsp70 protein 1405.7 0 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00012.10.fs 1/1 40 646 .. 1 618 [] 1405.7 0 PF00012.10.ls 1/1 40 646 .. 1 618 [] 1407.7 0 Alignments of top-scoring domains: PF00012.10.fs: domain 1 of 1, from 40 to 646: score 1405.7, E = 0 *->viGIDLGTTNScVAVmeggkpevIaNaeGnRtTPSvVAFtkkGErLV ++GIDLGTT+ScV+V+++gk+e+IaN++GnRtTPS+VAFt++ ErL+ bm03295 40 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLI 85 GqaAKrQavtNpeNTvfsvKRlIGRrfddpeVqsdikhvPykvvkdsngd G+aAK+Q+++Np+NTvf++KRlIGRrfdd +Vqsd+kh+P+ vv+d g bm03295 86 GDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVND-AGR 134 awveveylGkkkqftPeeISAmvLqKlKetAEayLGekVtdAVITVPAYF ++v+vey+G++k f Pee+S+mvL+K+Ke+AEayLG++Vt+AV+TVPAYF bm03295 135 PKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYF 184 NDaQRQATKDAGrIAGLnVlRIiNEPTAAALAYGLDKkdlpeeekernIl ND+QRQATKDAG+IAGLnVlRIiNEPTAAA+AYGLDKk + ern+l bm03295 185 NDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGA----ERNVL 230 VfDLGGGTFDVSiLeigdGVFEVkaTnGDThLGGeDFDnrlvdhlveeFk +fDLGGGTFDVSiL+i+dG+FEVk+T+GDThLGGeDFDnr+v+h+++eFk bm03295 231 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFK 280 kkegiDlskdkrAlqRLreaAEKAKieLSsssqteinLpfitadadGPkh +k+++D+s++krA++RLr+a+E+AK++LSs +t+++++++++++ G ++ bm03295 281 RKHKKDISENKRAVRRLRTACERAKRTLSS--STQASIEIDSLYE-G-ID 326 lsetLtRAkFEeLvadLfeRtlePvekaLkDAklsksdIdeVvLVGGsTR +++++tRA+FEeL+adLf+ tl+PvekaL+DAkl+ks+I+++vLVGGsTR bm03295 327 FYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTR 376 IPaVqelVkefFGGKePskgVNPDEAVAiGAAvQAGVLsG..seeVkDvl IP++q+l+++fF+GKe++k++NPDEAVA+GAAvQA++LsG++se V+D+l bm03295 377 IPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGdkSENVQDLL 426 LLDVtPLSLGIETlGGvmtklIeRNTTIPtkkSqiFSTaaDNQtaVeIqV LLDVtPLSLGIET+GGvmt lI+RNTTIPtk q+F+T++DNQ++V IqV bm03295 427 LLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQV 476 lqGERelakDNklLGqFeLdGIpPAPrGvPQIeVtFdIDANGIlnVsAkD ++GER+++kDN+lLG+FeL+GIpPAPrGvPQIeVtFdIDANGIlnVsA D bm03295 477 YEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVD 526 kgtgkeqkItItassgrLsddEIerMvkdAEkyaeeDkkrkeriEakNea k+tgke+kItIt+++grLs+++IerMv++AEky++eD+k+++++ kN++ bm03295 527 KSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSL 576 Eslvystekslkeeklgdkvseadkekl.kkveeaiewLkealegeddAe Es++++++ ++++ekl++k+ ++dk+k+ +k++e i+wL+++ ++Ae bm03295 577 ESYAFNMKATVEDEKLQGKINDEDKQKIlDKCNEIINWLDKN----QTAE 622 keeikakteeLqkvvqkigekmyq<-* kee++++++eL+kv+++i++k+yq bm03295 623 KEEFEHQQKELEKVCNPIITKLYQ 646 PF00012.10.ls: domain 1 of 1, from 40 to 646: score 1407.7, E = 0 *->viGIDLGTTNScVAVmeggkpevIaNaeGnRtTPSvVAFtkkGErLV ++GIDLGTT+ScV+V+++gk+e+IaN++GnRtTPS+VAFt++ ErL+ bm03295 40 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLI 85 GqaAKrQavtNpeNTvfsvKRlIGRrfddpeVqsdikhvPykvvkdsngd G+aAK+Q+++Np+NTvf++KRlIGRrfdd +Vqsd+kh+P+ vv+d g bm03295 86 GDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVND-AGR 134 awveveylGkkkqftPeeISAmvLqKlKetAEayLGekVtdAVITVPAYF ++v+vey+G++k f Pee+S+mvL+K+Ke+AEayLG++Vt+AV+TVPAYF bm03295 135 PKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYF 184 NDaQRQATKDAGrIAGLnVlRIiNEPTAAALAYGLDKkdlpeeekernIl ND+QRQATKDAG+IAGLnVlRIiNEPTAAA+AYGLDKk + ern+l bm03295 185 NDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVGA----ERNVL 230 VfDLGGGTFDVSiLeigdGVFEVkaTnGDThLGGeDFDnrlvdhlveeFk +fDLGGGTFDVSiL+i+dG+FEVk+T+GDThLGGeDFDnr+v+h+++eFk bm03295 231 IFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFK 280 kkegiDlskdkrAlqRLreaAEKAKieLSsssqteinLpfitadadGPkh +k+++D+s++krA++RLr+a+E+AK++LSs +t+++++++++++ G ++ bm03295 281 RKHKKDISENKRAVRRLRTACERAKRTLSS--STQASIEIDSLYE-G-ID 326 lsetLtRAkFEeLvadLfeRtlePvekaLkDAklsksdIdeVvLVGGsTR +++++tRA+FEeL+adLf+ tl+PvekaL+DAkl+ks+I+++vLVGGsTR bm03295 327 FYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTR 376 IPaVqelVkefFGGKePskgVNPDEAVAiGAAvQAGVLsG..seeVkDvl IP++q+l+++fF+GKe++k++NPDEAVA+GAAvQA++LsG++se V+D+l bm03295 377 IPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGdkSENVQDLL 426 LLDVtPLSLGIETlGGvmtklIeRNTTIPtkkSqiFSTaaDNQtaVeIqV LLDVtPLSLGIET+GGvmt lI+RNTTIPtk q+F+T++DNQ++V IqV bm03295 427 LLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQV 476 lqGERelakDNklLGqFeLdGIpPAPrGvPQIeVtFdIDANGIlnVsAkD ++GER+++kDN+lLG+FeL+GIpPAPrGvPQIeVtFdIDANGIlnVsA D bm03295 477 YEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVD 526 kgtgkeqkItItassgrLsddEIerMvkdAEkyaeeDkkrkeriEakNea k+tgke+kItIt+++grLs+++IerMv++AEky++eD+k+++++ kN++ bm03295 527 KSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSL 576 Eslvystekslkeeklgdkvseadkekl.kkveeaiewLkealegeddAe Es++++++ ++++ekl++k+ ++dk+k+ +k++e i+wL+++ ++Ae bm03295 577 ESYAFNMKATVEDEKLQGKINDEDKQKIlDKCNEIINWLDKN----QTAE 622 keeikakteeLqkvvqkigekmyq<-* kee++++++eL+kv+++i++k+yq bm03295 623 KEEFEHQQKELEKVCNPIITKLYQ 646 //