hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090416/iprscan-20090416-11273576/chunk_1/iprscan-20090416-11273576.nocrc
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Query sequence: bm03306
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
PF02518.16.fs Histidine kinase-, DNA gyrase B-, and HSP90    77.8    9.9e-22   1
PF02518.16.ls Histidine kinase-, DNA gyrase B-, and HSP90    79.7    8.4e-21   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
PF02518.16.fs   1/1     303   442 ..     1   127 []    77.8  9.9e-22
PF02518.16.ls   1/1     303   442 ..     1   127 []    79.7  8.4e-21

Alignments of top-scoring domains:
PF02518.16.fs: domain 1 of 1, from 303 to 442: score 77.8, E = 9.9e-22
                   *->gdedrLrqvlsNLldNAikhapag........geitvrlerdgdrlr
                        + +L  +l +Ll NA++++ +++ +++ + + + +++   + +l+
     bm03306   303    FIPMPLDYILPELLKNAMRATMEShldtpynvPDVVITIANNDVDLI 349  

                   itVeDnGpGIppehkisaedleriFepFyrtdg.ps........ae..sl
                   i+++D G GI+       +dl+r+ + +++t + ++++++ ++ +++ ++
     bm03306   350 IRISDRGGGIAH------KDLDRVMDYHFTTAEaSTqdprisplFGhlDM 393  

                   a.dsr.rkigGGLtGLGLaivkelvelhgGtitvesepggGttftltlPl
                   ++++ +    G  +G+GL  +++++e +gG+++++s  g Gt + l+l  
     bm03306   394 HsGAQsGPMHG--FGFGLPTSRAYAEYLGGSLQLQSLQGIGTDVYLRLRH 441  

                   a<-*
                       
     bm03306   442 I    442  

PF02518.16.ls: domain 1 of 1, from 303 to 442: score 79.7, E = 8.4e-21
                   *->gdedrLrqvlsNLldNAikhapag........geitvrlerdgdrlr
                        + +L  +l +Ll NA++++ +++ +++ + + + +++   + +l+
     bm03306   303    FIPMPLDYILPELLKNAMRATMEShldtpynvPDVVITIANNDVDLI 349  

                   itVeDnGpGIppehkisaedleriFepFyrtdg.ps........ae..sl
                   i+++D G GI+       +dl+r+ + +++t + ++++++ ++ +++ ++
     bm03306   350 IRISDRGGGIAH------KDLDRVMDYHFTTAEaSTqdprisplFGhlDM 393  

                   a.dsr.rkigGGLtGLGLaivkelvelhgGtitvesepggGttftltlPl
                   ++++ +    G  +G+GL  +++++e +gG+++++s  g Gt + l+l  
     bm03306   394 HsGAQsGPMHG--FGFGLPTSRAYAEYLGGSLQLQSLQGIGTDVYLRLRH 441  

                   a<-*
                       
     bm03306   442 I    442  

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