hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-16162906/chunk_1/iprscan-20080807-16162906.nocrc
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Query sequence: bm03376
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
PF00625.11.ls Guanylate kinase                          234.7    1.9e-67   1
PF00625.11.fs Guanylate kinase                          232.7    7.4e-67   1
PF00595.14.fs PDZ domain (Also known as DHR or GLGF)     96.4    1.9e-26   1
PF00595.14.ls PDZ domain (Also known as DHR or GLGF)     98.3    2.1e-26   1
PF07653.7.fs  Variant SH3 domain                         50.4    7.1e-14   1
PF07653.7.ls  Variant SH3 domain                         52.3    1.5e-12   1
PF00018.18.fs SH3 domain                                 26.7    1.7e-06   1
PF00018.18.ls SH3 domain                                 22.2    8.8e-05   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
PF00595.14.fs   1/1      83   161 ..     1    86 []    96.4  1.9e-26
PF00595.14.ls   1/1      83   161 ..     1    86 []    98.3  2.1e-26
PF00018.18.ls   1/1     173   238 ..     1    59 []    22.2  8.8e-05
PF07653.7.ls    1/1     174   238 ..     1    69 []    52.3  1.5e-12
PF07653.7.fs    1/1     174   238 ..     1    69 []    50.4  7.1e-14
PF00018.18.fs   1/1     196   232 ..    17    53 ..    26.7  1.7e-06
PF00625.11.fs   1/1     330   434 ..     1   107 []   232.7  7.4e-67
PF00625.11.ls   1/1     330   434 ..     1   107 []   234.7  1.9e-67

Alignments of top-scoring domains:
PF00595.14.fs: domain 1 of 1, from 83 to 161: score 96.4, E = 1.9e-26
                   *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL
                      ++++ek  + +++G+++k ++++    ++ v+++l+G g+++++G+L
     bm03376    83    LIQFEKV-TEEPMGITLKLNEKQ----SCTVARILHG-GMIHRQGSL 123  

                   qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-*
                   ++GD Il++NG++++n+s+++ ++a+k+++g  ++L+v+   
     bm03376   124 HVGDEILEINGTNVTNHSVDQLQKAMKETKG-MISLKVI    161  

PF00595.14.ls: domain 1 of 1, from 83 to 161: score 98.3, E = 2.1e-26
                   *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL
                      ++++ek  + +++G+++k ++++    ++ v+++l+G g+++++G+L
     bm03376    83    LIQFEKV-TEEPMGITLKLNEKQ----SCTVARILHG-GMIHRQGSL 123  

                   qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-*
                   ++GD Il++NG++++n+s+++ ++a+k+++g  ++L+v+   
     bm03376   124 HVGDEILEINGTNVTNHSVDQLQKAMKETKG-MISLKVI    161  

PF00018.18.ls: domain 1 of 1, from 173 to 238: score 22.2, E = 8.8e-05
                   *->kkvvALYDYeare.......sdELsFkkGDvitvleksddpgWWkgr
                      ++ +A +DY++  ++  + ++  L F  GD+i++++k+d+ +WW gr
     bm03376   173    MFMRAQFDYDPKKdnlipckEAGLKFATGDIIQIINKDDS-NWWQGR 218  

                   lkgtgGke..GliPsNYVepv<-*
                   + g++ ke+ GliPs  +++    
     bm03376   219 VEGSS-KEsaGLIPSPELQEW    238  

PF07653.7.ls: domain 1 of 1, from 174 to 238: score 52.3, E = 1.5e-12
                   *->ygraiedyvaAtdknenl.eeeeLslkkGdvvkVidvggskdddgww
                      ++ra +dy++  + n ++ +e+ L +  Gd++ +i    +kdd +ww
     bm03376   174    FMRAQFDYDP-KKDNLIPcKEAGLKFATGDIIQII----NKDDSNWW 215  

                   egeslgg....GrrrRGlvPssaveel<-*
                   +g++  +++++  +  Gl+Ps  ++e+   
     bm03376   216 QGRV--EgsskESA--GLIPSPELQEW    238  

PF07653.7.fs: domain 1 of 1, from 174 to 238: score 50.4, E = 7.1e-14
                   *->ygraiedyvaAtdknenl.eeeeLslkkGdvvkVidvggskdddgww
                      ++ra +dy++  + n ++ +e+ L +  Gd++ +i    +kdd +ww
     bm03376   174    FMRAQFDYDP-KKDNLIPcKEAGLKFATGDIIQII----NKDDSNWW 215  

                   egeslgg....GrrrRGlvPssaveel<-*
                   +g++  +++++  +  Gl+Ps  ++e+   
     bm03376   216 QGRV--EgsskESA--GLIPSPELQEW    238  

PF00018.18.fs: domain 1 of 1, from 196 to 232: score 26.7, E = 1.7e-06
                   *->LsFkkGDvitvleksddpgWWkgrlkgtgGke..GliPs<-*
                      L F  GD+i++++k+d+ +WW gr+ g++ ke+ GliPs   
     bm03376   196    LKFATGDIIQIINKDDS-NWWQGRVEGSS-KEsaGLIPS    232  

PF00625.11.fs: domain 1 of 1, from 330 to 434: score 232.7, E = 7.4e-67
                   *->TRpPRpgEvdGkDYhFVsSrEemekdIsaneFLEyaefnGNyYGTsk
                      TRpPR++E+dGk+YhF+s +Eem+++IsaneFLE+++++GN++GT++
     bm03376   330    TRPPRKSEEDGKEYHFIS-TEEMTRNISANEFLEFGSYQGNMFGTKF 375  

                   eaVrqvaksGkiciLDvepQGvkqlrtaelsNPvsvFIaPpSlqelekrL
                   e+V+q++k++ki+iLD+epQ++k++rtaels P++vFIaP+++++++++L
     bm03376   376 ETVHQIHKQNKIAILDIEPQTLKIVRTAELS-PFIVFIAPTDQGTQTEAL 424  

                   rgrnketEEs<-*
                   ++++k++E++   
     bm03376   425 QQLQKDSEAI    434  

PF00625.11.ls: domain 1 of 1, from 330 to 434: score 234.7, E = 1.9e-67
                   *->TRpPRpgEvdGkDYhFVsSrEemekdIsaneFLEyaefnGNyYGTsk
                      TRpPR++E+dGk+YhF+s +Eem+++IsaneFLE+++++GN++GT++
     bm03376   330    TRPPRKSEEDGKEYHFIS-TEEMTRNISANEFLEFGSYQGNMFGTKF 375  

                   eaVrqvaksGkiciLDvepQGvkqlrtaelsNPvsvFIaPpSlqelekrL
                   e+V+q++k++ki+iLD+epQ++k++rtaels P++vFIaP+++++++++L
     bm03376   376 ETVHQIHKQNKIAILDIEPQTLKIVRTAELS-PFIVFIAPTDQGTQTEAL 424  

                   rgrnketEEs<-*
                   ++++k++E++   
     bm03376   425 QQLQKDSEAI    434  

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