hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-16162906/chunk_1/iprscan-20080807-16162906.nocrc
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Query sequence: bm03376
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00072                                                 269.5    2.6e-76   1
SM00228                                                  65.4      7e-15   1
SM00326                                                  56.4    3.8e-12   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00228    1/1      92   164 ..     1    80 []    65.4    7e-15
SM00326    1/1     173   239 ..     1    58 []    56.4  3.8e-12
SM00072    1/1     293   466 ..     1   203 []   269.5  2.6e-76

Alignments of top-scoring domains:
SM00228: domain 1 of 1, from 92 to 164: score 65.4, E = 7e-15
                   *->gglGfsivg....gifvssvvpGspAakaGrkslglLkvGDvIleVN
                      +++G++++ ++++ + v+++++G+  ++ G      L+vGD+Ile+N
     bm03376    92    EPMGITLKLnekqSCTVARILHGGMIHRQGS-----LHVGDEILEIN 133  

                   GetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   G t+v++ + ++ ++++k+++g      ++L+v+++    
     bm03376   134 G-TNVTNHSVDQLQKAMKETKG-----MISLKVIPNQ    164  

SM00326: domain 1 of 1, from 173 to 239: score 56.4, E = 3.8e-12
                   *->eyvvAlYDyea.......qnedELsFkkGDiitvleksddgWweGel
                      ++++A++Dy++++++  ++ e  L F  GDii++++k+d++Ww+G++
     bm03376   173    MFMRAQFDYDPkkdnlipCKEAGLKFATGDIIQIINKDDSNWWQGRV 219  

                   nr..tGkeGlfPsnYVeeie<-*
                    ++++   Gl+Ps  ++e +   
     bm03376   220 EGssKESAGLIPSPELQEWR    239  

SM00072: domain 1 of 1, from 293 to 466: score 269.5, E = 2.6e-76
                   *->drRpivLsGpsGvGKstlkakLlqeyPdypkfgfsVshTTRppRpgE
                      +r+++vL+G+sGvG+s++k++Ll+++P+  kf ++V++TTRppR++E
     bm03376   293    KRKTLVLIGASGVGRSHIKNALLSQNPE--KFVYPVPYTTRPPRKSE 337  

                   vnGPvvDYhFvsLkeefeqdiksgkflEwgeysgnlyYGTskesvrqvae
                   ++G  ++YhF+s +ee+ + i++++flE+g+y+gn ++GT+ e+v+q+++
     bm03376   338 EDG--KEYHFIS-TEEMTRNISANEFLEFGSYQGN-MFGTKFETVHQIHK 383  

                   kGKhclLDidpqgvkqlkkarRkselnpiviFIapPsleeleerlrgaeq
                   ++K+++LDi+pq +k +++a    el+p+++FIa P+++  +++      
     bm03376   384 QNKIAILDIEPQTLKIVRTA----ELSPFIVFIA-PTDQGTQTEA----- 423  

                   RgteteeriqkrlaaaaqkeaqeyskeahlFdlvivnddledayYkeLke
                        ++++qk ++a ++  +++y      Fdl +vn+ +++++ k+L+e
     bm03376   424 -----LQQLQKDSEA-IRSQYAHY------FDLSLVNNGVDETL-KKLQE 460  

                   ileaeq<-*
                   ++++ +   
     bm03376   461 AFDQAC    466  

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