hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-17462066/chunk_1/iprscan-20080808-17462066.nocrc
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Query sequence: bm03421
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01151.9.fs GNS1/SUR4 family                                23.1    1.5e-06   2
PF01151.9.ls GNS1/SUR4 family                              -151.8     0.0045   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01151.9.ls   1/1      32   246 ..     1   322 []  -151.8   0.0045

Alignments of top-scoring domains:
PF01151.9.ls: domain 1 of 1, from 32 to 246: score -151.8, E = 0.0045
                   *->aellEkysdLndsssCFLKvyvPtierPFfNIyLWehFdkvvk.yvt
                        +l  ++  +                 F   +L  +F    +++ t
     bm03421    32    PLGLKGFQMEH-----------------FD-ASLSTYFKALLGpRDT 60   

                   sgrFppeqFefirgktpLsnkYWyhsitiivvYyivIFgGrklleklnAK
                               +g+  L n    +    +v+Y  +   G k +++    
     bm03421    61 R----------VKGWFLLDNY--IPTFICSVIYLLIVWLGPKYMRNK--Q 96   

                   PfkLklllqvhNlfLtsfSllllLlMveqlvpsvyaeGNSLYfsiCnses
                   Pf  +++l v+Nl Lt +S    L M  +lv  v  eG   Y   C    
     bm03421    97 PFSCRGILVVYNLGLTLLS----LYMFCELVTGVW-EG--KYNFFCQG-T 138  

                   wtqG....vlvtLyylnylsKfvELiDTvFlVLRk..RkLiFLHtYHHgA
                    t G+++ +       +y sK++E+ DT+F +LRk++   + LH YHH+ 
     bm03421   139 RTAGesdmKIIRVLWWYYFSKLIEFMDTFFFILRKnnHQITVLHVYHHAS 188  

                   tallcyhqlvghTAvgwvpIlLNlgVHvLMYwYYfLsAlGiRvPKWwkmw
                                        LN                   +  Ww   
     bm03421   189 --------------------MLN-------------------I--WW--- 194  

                   VTrlQiiQflldvifIyfavYqkkvhkylpgilPncgdCqgsvaal....
                           f++  +               p     cg      ++ +++ 
     bm03421   195 --------FVMNWV---------------P-----CGHSSVCADNHpdql 216  

                   .algfaIltsYllLFIsFYikaYkkKssKtsKkvkne<-*
                   ++  ++ + s l+ F    i+           +  +    
     bm03421   217 rGHLAVHIPSWLVVFPD-WIHDFPDC------SLHKL    246  

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