# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Obm03489.fasta.nr -Q bm03489.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 bm03489, 451 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6823889 sequences Expectation_n fit: rho(ln(x))= 5.4917+/-0.000185; mu= 8.7348+/- 0.010 mean_var=80.0291+/-15.510, 0's: 38 Z-trim: 48 B-trim: 14 in 1/65 Lambda= 0.143367 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|62089184|dbj|BAD93036.1| COP9 constitutive phot ( 451) 2950 619.9 3.5e-175 gi|13445486|gb|AAK26250.1|AF212227_1 TRIP15-ISO [H ( 450) 2944 618.6 8.2e-175 gi|89994045|gb|AAI14036.1| COP9 constitutive photo ( 450) 2937 617.2 2.2e-174 gi|12845789|dbj|BAB26900.1| unnamed protein produc ( 450) 2927 615.1 9.3e-174 gi|126278241|ref|XP_001380487.1| PREDICTED: simila ( 544) 2869 603.2 4.4e-170 gi|47115521|sp|P61203|CSN2_RAT COP9 signalosome co ( 443) 2867 602.7 5e-170 gi|5410310|gb|AAD43026.1| thyroid receptor interac ( 443) 2862 601.7 1e-169 gi|74222267|dbj|BAE26937.1| unnamed protein produc ( 443) 2862 601.7 1e-169 gi|167773677|gb|ABZ92273.1| COP9 constitutive phot ( 443) 2861 601.5 1.2e-169 gi|62896739|dbj|BAD96310.1| COP9 constitutive phot ( 443) 2861 601.5 1.2e-169 gi|189069189|dbj|BAG35527.1| unnamed protein produ ( 443) 2857 600.6 2.1e-169 gi|53136468|emb|CAG32563.1| hypothetical protein [ ( 443) 2856 600.4 2.4e-169 gi|59808840|gb|AAH90102.1| MGC97656 protein [Xenop ( 443) 2856 600.4 2.4e-169 gi|55976411|sp|Q6IQT4|CSN2_BRARE COP9 signalosome ( 443) 2853 599.8 3.7e-169 gi|119597770|gb|EAW77364.1| COP9 constitutive phot ( 446) 2851 599.4 5e-169 gi|49457079|emb|CAG46860.1| TRIP15 [Homo sapiens] ( 443) 2850 599.2 5.7e-169 gi|3309166|gb|AAC33899.1| COP9 complex subunit 2 [ ( 440) 2847 598.6 8.8e-169 gi|18606281|gb|AAH23096.1| Cops2 protein [Mus musc ( 440) 2843 597.7 1.6e-168 gi|74000051|ref|XP_862009.1| PREDICTED: similar to ( 444) 2842 597.5 1.8e-168 gi|55976412|sp|Q6IR75|CSN2_XENLA COP9 signalosome ( 441) 2840 597.1 2.4e-168 gi|83318454|gb|AAI08779.1| LOC432342 protein [Xeno ( 443) 2838 596.7 3.2e-168 gi|109122331|ref|XP_001089276.1| PREDICTED: simila ( 443) 2821 593.2 3.7e-167 gi|156547875|ref|XP_001607475.1| PREDICTED: simila ( 444) 2506 528.0 1.5e-147 gi|66501010|ref|XP_392587.2| PREDICTED: similar to ( 444) 2501 527.0 3.1e-147 gi|91075970|ref|XP_969453.1| PREDICTED: similar to ( 444) 2483 523.3 4.1e-146 gi|108878544|gb|EAT42769.1| cop9 signalosome compl ( 444) 2460 518.5 1.1e-144 gi|72013149|ref|XP_780196.1| PREDICTED: similar to ( 444) 2454 517.3 2.6e-144 gi|54644149|gb|EAL32891.1| GA21877-PA [Drosophila ( 444) 2425 511.3 1.7e-142 gi|194160764|gb|EDW75665.1| GK23707 [Drosophila wi ( 444) 2419 510.0 3.9e-142 gi|33112252|sp|Q94899|CSN2_DROME COP9 signalosome ( 444) 2419 510.0 3.9e-142 gi|190617454|gb|EDV32978.1| GF22104 [Drosophila an ( 444) 2415 509.2 7e-142 gi|193895190|gb|EDV94056.1| GH25117 [Drosophila gr ( 444) 2414 509.0 8.1e-142 gi|30176315|gb|EAA10217.2| AGAP008598-PA [Anophele ( 445) 2411 508.4 1.2e-141 gi|193913149|gb|EDW12016.1| GI11968 [Drosophila mo ( 444) 2408 507.8 1.9e-141 gi|194147547|gb|EDW63245.1| GJ14108 [Drosophila vi ( 444) 2405 507.2 2.9e-141 gi|193622504|ref|XP_001944088.1| PREDICTED: simila ( 444) 2359 497.6 2.1e-138 gi|190581037|gb|EDV21116.1| COP9 complex subunit 2 ( 442) 2337 493.1 5e-137 gi|149609920|ref|XP_001521692.1| PREDICTED: simila ( 705) 2301 485.8 1.3e-134 gi|167871663|gb|EDS35046.1| COP9 signalosome compl ( 399) 2266 478.4 1.2e-132 gi|74000047|ref|XP_861951.1| PREDICTED: similar to ( 401) 2082 440.3 3.5e-121 gi|119903946|ref|XP_001250692.1| PREDICTED: simila ( 460) 2076 439.1 9.2e-121 gi|47230660|emb|CAF99853.1| unnamed protein produc ( 400) 2059 435.6 9.4e-120 gi|1497983|gb|AAB49932.1| putative thyroid recepto ( 360) 2051 433.9 2.7e-119 gi|158597025|gb|EDP35264.1| COP9 signalosome compl ( 438) 1957 414.5 2.3e-113 gi|4835849|gb|AAD30269.1|AF120268_1 ALIEN [Homo sa ( 305) 1950 412.9 4.7e-113 gi|162681682|gb|EDQ68107.1| predicted protein [Phy ( 439) 1920 406.8 4.6e-111 gi|113532277|dbj|BAF04660.1| Os01g0279200 [Oryza s ( 439) 1908 404.4 2.6e-110 gi|162680059|gb|EDQ66499.1| predicted protein [Phy ( 433) 1906 403.9 3.4e-110 gi|56783671|dbj|BAD81083.1| putative COP9 signalos ( 433) 1902 403.1 6e-110 gi|162678392|gb|EDQ64851.1| predicted protein [Phy ( 433) 1897 402.1 1.2e-109 >>gi|62089184|dbj|BAD93036.1| COP9 constitutive photomor (451 aa) initn: 2950 init1: 2950 opt: 2950 Z-score: 3300.3 bits: 619.9 E(): 3.5e-175 Smith-Waterman score: 2950; 100.000% identity (100.000% similar) in 451 aa overlap (1-451:1-451) 10 20 30 40 50 60 bm0348 KMSDMEDDFMCDDEEDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 KMSDMEDDFMCDDEEDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLE 10 20 30 40 50 60 70 80 90 100 110 120 bm0348 LEGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 LEGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYI 70 80 90 100 110 120 130 140 150 160 170 180 bm0348 STSKQNSDFLCQMDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 STSKQNSDFLCQMDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKIL 130 140 150 160 170 180 190 200 210 220 230 240 bm0348 RQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 RQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPL 190 200 210 220 230 240 250 260 270 280 290 300 bm0348 IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGIN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGIN 250 260 270 280 290 300 310 320 330 340 350 360 bm0348 PFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 PFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLR 310 320 330 340 350 360 370 380 390 400 410 420 bm0348 NIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 NIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELD 370 380 390 400 410 420 430 440 450 bm0348 HQKRGGARYTALDKWTNQLNSLNQAVVSKLA ::::::::::::::::::::::::::::::: gi|620 HQKRGGARYTALDKWTNQLNSLNQAVVSKLA 430 440 450 >>gi|13445486|gb|AAK26250.1|AF212227_1 TRIP15-ISO [Homo (450 aa) initn: 2944 init1: 2944 opt: 2944 Z-score: 3293.6 bits: 618.6 E(): 8.2e-175 Smith-Waterman score: 2944; 100.000% identity (100.000% similar) in 450 aa overlap (2-451:1-450) 10 20 30 40 50 60 bm0348 KMSDMEDDFMCDDEEDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLE ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|134 MSDMEDDFMCDDEEDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLE 10 20 30 40 50 70 80 90 100 110 120 bm0348 LEGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|134 LEGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYI 60 70 80 90 100 110 130 140 150 160 170 180 bm0348 STSKQNSDFLCQMDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|134 STSKQNSDFLCQMDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKIL 120 130 140 150 160 170 190 200 210 220 230 240 bm0348 RQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|134 RQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPL 180 190 200 210 220 230 250 260 270 280 290 300 bm0348 IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGIN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|134 IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGIN 240 250 260 270 280 290 310 320 330 340 350 360 bm0348 PFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|134 PFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLR 300 310 320 330 340 350 370 380 390 400 410 420 bm0348 NIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|134 NIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELD 360 370 380 390 400 410 430 440 450 bm0348 HQKRGGARYTALDKWTNQLNSLNQAVVSKLA ::::::::::::::::::::::::::::::: gi|134 HQKRGGARYTALDKWTNQLNSLNQAVVSKLA 420 430 440 450 >>gi|89994045|gb|AAI14036.1| COP9 constitutive photomorp (450 aa) initn: 2937 init1: 2937 opt: 2937 Z-score: 3285.8 bits: 617.2 E(): 2.2e-174 Smith-Waterman score: 2937; 99.778% identity (99.778% similar) in 450 aa overlap (2-451:1-450) 10 20 30 40 50 60 bm0348 KMSDMEDDFMCDDEEDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLE ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|899 MSDMEDDFMCDDEEDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLE 10 20 30 40 50 70 80 90 100 110 120 bm0348 LEGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|899 LEGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYI 60 70 80 90 100 110 130 140 150 160 170 180 bm0348 STSKQNSDFLCQMDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|899 STSKQNSDFLCQMDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKIL 120 130 140 150 160 170 190 200 210 220 230 240 bm0348 RQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|899 RQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPL 180 190 200 210 220 230 250 260 270 280 290 300 bm0348 IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGIN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|899 IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGIN 240 250 260 270 280 290 310 320 330 340 350 360 bm0348 PFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLR ::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::: gi|899 PFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKIQKTNHSNIMDDPFIREHIEELLR 300 310 320 330 340 350 370 380 390 400 410 420 bm0348 NIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|899 NIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELD 360 370 380 390 400 410 430 440 450 bm0348 HQKRGGARYTALDKWTNQLNSLNQAVVSKLA ::::::::::::::::::::::::::::::: gi|899 HQKRGGARYTALDKWTNQLNSLNQAVVSKLA 420 430 440 450 >>gi|12845789|dbj|BAB26900.1| unnamed protein product [M (450 aa) initn: 2927 init1: 2927 opt: 2927 Z-score: 3274.6 bits: 615.1 E(): 9.3e-174 Smith-Waterman score: 2927; 99.333% identity (99.556% similar) in 450 aa overlap (2-451:1-450) 10 20 30 40 50 60 bm0348 KMSDMEDDFMCDDEEDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLE ::::::::::::::::::::::::::::::::::::::: :::::::::::. :::::: gi|128 MSDMEDDFMCDDEEDYDLEYSEDSNSEPNVDLENQYYNSYALKEDDPKAALTXFQKVLE 10 20 30 40 50 70 80 90 100 110 120 bm0348 LEGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 LEGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYI 60 70 80 90 100 110 130 140 150 160 170 180 bm0348 STSKQNSDFLCQMDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 STSKQNSDFLCQMDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKIL 120 130 140 150 160 170 190 200 210 220 230 240 bm0348 RQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 RQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPL 180 190 200 210 220 230 250 260 270 280 290 300 bm0348 IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGIN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGIN 240 250 260 270 280 290 310 320 330 340 350 360 bm0348 PFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 PFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLR 300 310 320 330 340 350 370 380 390 400 410 420 bm0348 NIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 NIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELD 360 370 380 390 400 410 430 440 450 bm0348 HQKRGGARYTALDKWTNQLNSLNQAVVSKLA ::::::::::::::::::::::::::::::: gi|128 HQKRGGARYTALDKWTNQLNSLNQAVVSKLA 420 430 440 450 >>gi|126278241|ref|XP_001380487.1| PREDICTED: similar to (544 aa) initn: 2089 init1: 2089 opt: 2869 Z-score: 3208.6 bits: 603.2 E(): 4.4e-170 Smith-Waterman score: 2869; 98.226% identity (98.448% similar) in 451 aa overlap (1-451:101-544) 10 20 30 bm0348 KMSDMEDDFMCDDEEDYDLEYSEDSNSEPN :::::::::::::::::::::::::::::: gi|126 GGDSAPRGGLWEKVVSSFSSPPLSLPPLPAKMSDMEDDFMCDDEEDYDLEYSEDSNSEPN 80 90 100 110 120 130 40 50 60 70 80 90 bm0348 VDLENQYYNSKALKEDDPKAALSSFQKVLELEGEKGEWGFKALKQMIKINFKLTNFPEMM :::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::: gi|126 VDLENQYYNSKALKEDDPKAALSSFQKVLELEGEKGEWGFKALKQMIKINFKLTNYPEMM 140 150 160 170 180 190 100 110 120 130 140 150 bm0348 NRYKQLLTYIRSAVTRNYSEKSINSILDYISTSKQNSDFLCQMDLLQEFYETTLEALKDA ::::::::::::::::::::::::::::::::::: :::::::::::::::::: gi|126 NRYKQLLTYIRSAVTRNYSEKSINSILDYISTSKQ-------MDLLQEFYETTLEALKDA 200 210 220 230 240 160 170 180 190 200 210 bm0348 KNDRLWFKTNTKLGKLYLEREEYGKLQKILRQLHQSCQTDDGEDDLKKGTQLLEIYALEI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 KNDRLWFKTNTKLGKLYLEREEYGKLQKILRQLHQSCQTDDGEDDLKKGTQLLEIYALEI 250 260 270 280 290 300 220 230 240 250 260 270 bm0348 QMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 QMYTAQKNNKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF 310 320 330 340 350 360 280 290 300 310 320 330 bm0348 KNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVSAYQNND :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 KNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVSAYQNND 370 380 390 400 410 420 340 350 360 370 380 390 bm0348 ITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 ITEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDV 430 440 450 460 470 480 400 410 420 430 440 450 bm0348 ADVESLLVQCILDNTIHGRIDQVNQLLELDHQKRGGARYTALDKWTNQLNSLNQAVVSKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 ADVESLLVQCILDNTIHGRIDQVNQLLELDHQKRGGARYTALDKWTNQLNSLNQAVVSKL 490 500 510 520 530 540 bm0348 A : gi|126 A >>gi|47115521|sp|P61203|CSN2_RAT COP9 signalosome comple (443 aa) initn: 2089 init1: 2089 opt: 2867 Z-score: 3207.6 bits: 602.7 E(): 5e-170 Smith-Waterman score: 2867; 98.444% identity (98.444% similar) in 450 aa overlap (2-451:1-443) 10 20 30 40 50 60 bm0348 KMSDMEDDFMCDDEEDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLE ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|471 MSDMEDDFMCDDEEDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLE 10 20 30 40 50 70 80 90 100 110 120 bm0348 LEGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|471 LEGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYI 60 70 80 90 100 110 130 140 150 160 170 180 bm0348 STSKQNSDFLCQMDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKIL ::::: :::::::::::::::::::::::::::::::::::::::::::::::: gi|471 STSKQ-------MDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKIL 120 130 140 150 160 170 190 200 210 220 230 240 bm0348 RQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|471 RQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPL 180 190 200 210 220 230 250 260 270 280 290 300 bm0348 IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGIN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|471 IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGIN 240 250 260 270 280 290 310 320 330 340 350 360 bm0348 PFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|471 PFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLR 300 310 320 330 340 350 370 380 390 400 410 420 bm0348 NIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|471 NIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELD 360 370 380 390 400 410 430 440 450 bm0348 HQKRGGARYTALDKWTNQLNSLNQAVVSKLA ::::::::::::::::::::::::::::::: gi|471 HQKRGGARYTALDKWTNQLNSLNQAVVSKLA 420 430 440 >>gi|5410310|gb|AAD43026.1| thyroid receptor interactor (443 aa) initn: 2084 init1: 2084 opt: 2862 Z-score: 3202.1 bits: 601.7 E(): 1e-169 Smith-Waterman score: 2862; 98.222% identity (98.444% similar) in 450 aa overlap (2-451:1-443) 10 20 30 40 50 60 bm0348 KMSDMEDDFMCDDEEDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLE ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|541 MSDMEDDFMCDDEEDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLE 10 20 30 40 50 70 80 90 100 110 120 bm0348 LEGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|541 LEGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYI 60 70 80 90 100 110 130 140 150 160 170 180 bm0348 STSKQNSDFLCQMDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKIL ::::: ::::::::::::::::::::::::::.::::::::::::::::::::: gi|541 STSKQ-------MDLLQEFYETTLEALKDAKNDRLWFKANTKLGKLYLEREEYGKLQKIL 120 130 140 150 160 170 190 200 210 220 230 240 bm0348 RQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|541 RQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPL 180 190 200 210 220 230 250 260 270 280 290 300 bm0348 IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGIN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|541 IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGIN 240 250 260 270 280 290 310 320 330 340 350 360 bm0348 PFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|541 PFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLR 300 310 320 330 340 350 370 380 390 400 410 420 bm0348 NIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|541 NIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELD 360 370 380 390 400 410 430 440 450 bm0348 HQKRGGARYTALDKWTNQLNSLNQAVVSKLA ::::::::::::::::::::::::::::::: gi|541 HQKRGGARYTALDKWTNQLNSLNQAVVSKLA 420 430 440 >>gi|74222267|dbj|BAE26937.1| unnamed protein product [M (443 aa) initn: 2084 init1: 2084 opt: 2862 Z-score: 3202.1 bits: 601.7 E(): 1e-169 Smith-Waterman score: 2862; 98.222% identity (98.444% similar) in 450 aa overlap (2-451:1-443) 10 20 30 40 50 60 bm0348 KMSDMEDDFMCDDEEDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLE ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 MSDMEDDFMCDDEEDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLE 10 20 30 40 50 70 80 90 100 110 120 bm0348 LEGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 LEGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYI 60 70 80 90 100 110 130 140 150 160 170 180 bm0348 STSKQNSDFLCQMDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKIL ::::: :::::::::::::::::::::::::::::::::::::::::::::::: gi|742 STSKQ-------MDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKIL 120 130 140 150 160 170 190 200 210 220 230 240 bm0348 RQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 RQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPL 180 190 200 210 220 230 250 260 270 280 290 300 bm0348 IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGIN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGIN 240 250 260 270 280 290 310 320 330 340 350 360 bm0348 PFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 PFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLR 300 310 320 330 340 350 370 380 390 400 410 420 bm0348 NIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 NIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELD 360 370 380 390 400 410 430 440 450 bm0348 HQKRGGARYTALDKWTNQLNSLNQAVVSKLA :::::::::::::::.::::::::::::::: gi|742 HQKRGGARYTALDKWNNQLNSLNQAVVSKLA 420 430 440 >>gi|167773677|gb|ABZ92273.1| COP9 constitutive photomor (443 aa) initn: 2083 init1: 2083 opt: 2861 Z-score: 3200.9 bits: 601.5 E(): 1.2e-169 Smith-Waterman score: 2861; 98.222% identity (98.222% similar) in 450 aa overlap (2-451:1-443) 10 20 30 40 50 60 bm0348 KMSDMEDDFMCDDEEDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLE ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|167 MSDMEDDFMCDDEEDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLE 10 20 30 40 50 70 80 90 100 110 120 bm0348 LEGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|167 LEGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYI 60 70 80 90 100 110 130 140 150 160 170 180 bm0348 STSKQNSDFLCQMDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKIL ::::: :::::::::::::::::::::::::::::::::::::::::::::::: gi|167 STSKQ-------MDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKIL 120 130 140 150 160 170 190 200 210 220 230 240 bm0348 RQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|167 RQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPL 180 190 200 210 220 230 250 260 270 280 290 300 bm0348 IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGIN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|167 IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGIN 240 250 260 270 280 290 310 320 330 340 350 360 bm0348 PFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|167 PFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLR 300 310 320 330 340 350 370 380 390 400 410 420 bm0348 NIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELD : :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|167 NTRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELD 360 370 380 390 400 410 430 440 450 bm0348 HQKRGGARYTALDKWTNQLNSLNQAVVSKLA ::::::::::::::::::::::::::::::: gi|167 HQKRGGARYTALDKWTNQLNSLNQAVVSKLA 420 430 440 >>gi|62896739|dbj|BAD96310.1| COP9 constitutive photomor (443 aa) initn: 2083 init1: 2083 opt: 2861 Z-score: 3200.9 bits: 601.5 E(): 1.2e-169 Smith-Waterman score: 2861; 98.222% identity (98.444% similar) in 450 aa overlap (2-451:1-443) 10 20 30 40 50 60 bm0348 KMSDMEDDFMCDDEEDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLE ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 MSDMEDDFMCDDEEDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLE 10 20 30 40 50 70 80 90 100 110 120 bm0348 LEGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 LEGEKGEWGFKALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYI 60 70 80 90 100 110 130 140 150 160 170 180 bm0348 STSKQNSDFLCQMDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKIL ::::: :::::::::::::::::::::::::::::::::::::::::::::::: gi|628 STSKQ-------MDLLQEFYETTLEALKDAKNDRLWFKTNTKLGKLYLEREEYGKLQKIL 120 130 140 150 160 170 190 200 210 220 230 240 bm0348 RQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 RQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNNKKLKALYEQSLHIKSAIPHPL 180 190 200 210 220 230 250 260 270 280 290 300 bm0348 IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGIN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGIN 240 250 260 270 280 290 310 320 330 340 350 360 bm0348 PFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLR :::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::: gi|628 PFDSQEAKPYKSDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEELLR 300 310 320 330 340 350 370 380 390 400 410 420 bm0348 NIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 NIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELD 360 370 380 390 400 410 430 440 450 bm0348 HQKRGGARYTALDKWTNQLNSLNQAVVSKLA ::::::::::::::::::::::::::::::: gi|628 HQKRGGARYTALDKWTNQLNSLNQAVVSKLA 420 430 440 451 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Thu Aug 7 16:20:05 2008 done: Thu Aug 7 16:22:32 2008 Total Scan time: 844.210 Total Display time: 0.140 Function used was FASTA [version 34.26.5 April 26, 2007]