hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-16223242/chunk_1/iprscan-20080807-16223242.nocrc
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Query sequence: bm03489
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01399.17.ls PCI domain                                     134.9      2e-37   1
PF01399.17.fs PCI domain                                     133.1    6.9e-37   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01399.17.fs   1/1     317   421 ..     1   135 []   133.1  6.9e-37
PF01399.17.ls   1/1     317   421 ..     1   135 []   134.9    2e-37

Alignments of top-scoring domains:
PF01399.17.fs: domain 1 of 1, from 317 to 421: score 133.1, E = 6.9e-37
                   *->payrdLleafysgdlsdfeeiladhvmAKalkGwqkkeellldpgla
                      +a++ L+ a++++d+++fe+il+ +            +++++dp+++
     bm03489   317    LAMTNLVSAYQNNDITEFEKILKTN-----------HSNIMDDPFIR 352  

                   ekvwlegdkhledLrrkirelnlrrlakftysapYssislsdlakllgls
                   e        h+e+L r+ir+++l++l+k     pY++i++ +++k+l+++
     bm03489   353 E--------HIEELLRNIRTQVLIKLIK-----PYTRIHIPFISKELNID 389  

                   vvedvlqdevEkilsklIrdglirgkIDqvngivvvse<-*
                   v      ++vE++l+++I+d+ i+g+IDqvn+ ++ ++   
     bm03489   390 V------ADVESLLVQCILDNTIHGRIDQVNQLLELDH    421  

PF01399.17.ls: domain 1 of 1, from 317 to 421: score 134.9, E = 2e-37
                   *->payrdLleafysgdlsdfeeiladhvmAKalkGwqkkeellldpgla
                      +a++ L+ a++++d+++fe+il+ +            +++++dp+++
     bm03489   317    LAMTNLVSAYQNNDITEFEKILKTN-----------HSNIMDDPFIR 352  

                   ekvwlegdkhledLrrkirelnlrrlakftysapYssislsdlakllgls
                   e        h+e+L r+ir+++l++l+k     pY++i++ +++k+l+++
     bm03489   353 E--------HIEELLRNIRTQVLIKLIK-----PYTRIHIPFISKELNID 389  

                   vvedvlqdevEkilsklIrdglirgkIDqvngivvvse<-*
                   v      ++vE++l+++I+d+ i+g+IDqvn+ ++ ++   
     bm03489   390 V------ADVESLLVQCILDNTIHGRIDQVNQLLELDH    421  

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