hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-16223242/chunk_1/iprscan-20080807-16223242.nocrc
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Query sequence: bm03489
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00753                                                 231.9    5.5e-65   1
SM00088                                                 101.9    7.3e-26   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00753    1/1     177   351 ..     1   186 []   231.9  5.5e-65
SM00088    1/1     353   435 ..     1    92 []   101.9  7.3e-26

Alignments of top-scoring domains:
SM00753: domain 1 of 1, from 177 to 351: score 231.9, E = 5.5e-65
                   *->ylealelrstllrelrtadlKkdelgllvlvnLllSkiYlklnnldl
                      ++++++l++ +++ ++++dlKk+ ++ll++++L++ ++Y++ +n+++
     bm03489   177    QKILRQLHQSCQTDDGEDDLKKG-TQLLEIYALEI-QMYTAQKNNKK 221  

                   akallskaarteraslansayappsqqarydyylGrihaleldyktAfsy
                   +kal++ +++ +      sa+++p +++++++++G++h+ e+++++A+++
     bm03489   222 LKALYEQSLHIK------SAIPHPLIMGVIRECGGKMHLREGEFEKAHTD 265  

                   ffeAfrkcpelgsakgfrrqiLkYlilvkLLlgseiiPdrsllrqkkllk
                   ffeAf++++e+gs  ++r+++LkYl+l+++L++s+i+P++s++ ++++++
     bm03489   266 FFEAFKNYDESGS--PRRTTCLKYLVLANMLMKSGINPFDSQEAKPYKND 313  

                   tliaykTdlaqAvrnGdLklFekaLqqyedeflkdgiyl<-*
                   ++i+++T+l++A++n+d+ +Fek+L+ + + +++d+ ++   
     bm03489   314 PEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDP-FI    351  

SM00088: domain 1 of 1, from 353 to 435: score 101.9, E = 7.3e-26
                   *->qhverLqrkiretnllqlsepYPssislsdlakllglsvpeevEklv
                      +h+e+L+r+ir+++l++l++pY ++i + +++k+l+++v++ vE+l+
     bm03489   353    EHIEELLRNIRTQVLIKLIKPY-TRIHIPFISKELNIDVAD-VESLL 397  

                   skaIrdgeisakIDqvngivefeevdpryltsnqlaqlaerlkkl<-*
                   +++I+d+ i+++IDqvn+ +e+++        ++  + +++l+k+   
     bm03489   398 VQCILDNTIHGRIDQVNQLLELDHQ-------KRGGARYTALDKW    435  

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