hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-16281743/chunk_1/iprscan-20080807-16281743.nocrc
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Query sequence: bm03493
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00400.22.ls WD domain, G-beta repeat                       164.2      3e-46   5
PF00400.22.fs WD domain, G-beta repeat                       154.2    3.1e-43   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00400.22.fs   1/5     198   237 ..     1    38 []    30.8    1e-07
PF00400.22.ls   1/5     198   237 ..     1    38 []    32.8  1.1e-06
PF00400.22.ls   2/5     248   287 ..     1    38 []    25.6  0.00016
PF00400.22.fs   2/5     248   287 ..     1    38 []    23.6  1.1e-05
PF00400.22.ls   3/5     294   333 ..     1    38 []    41.0  3.8e-09
PF00400.22.fs   3/5     294   333 ..     1    38 []    39.0  5.2e-10
PF00400.22.fs   4/5     338   377 ..     1    38 []    32.3  3.9e-08
PF00400.22.ls   4/5     338   377 ..     1    38 []    34.3  3.9e-07
PF00400.22.fs   5/5     395   434 ..     1    38 []    28.6  4.5e-07
PF00400.22.ls   5/5     395   434 ..     1    38 []    30.6  5.3e-06

Alignments of top-scoring domains:
PF00400.22.fs: domain 1 of 5, from 198 to 237: score 30.8, E = 1e-07
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      +++   l+gH++  + ++++ + + +l+s+S+D+t+++Wd   
     bm03493   198    CNPDlRLrGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWD    237  

PF00400.22.ls: domain 1 of 5, from 198 to 237: score 32.8, E = 1.1e-06
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      +++   l+gH++  + ++++ + + +l+s+S+D+t+++Wd   
     bm03493   198    CNPDlRLrGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWD    237  

PF00400.22.ls: domain 2 of 5, from 248 to 287: score 25.6, E = 0.00016
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       + k +++gH++ V++va++  + +l+ s  +D ++ iWd   
     bm03493   248    VDAKaIFtGHSAVVEDVAWHLLHESLFGSVADDQKLMIWD    287  

PF00400.22.fs: domain 2 of 5, from 248 to 287: score 23.6, E = 1.1e-05
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       + k +++gH++ V++va++  + +l+ s  +D ++ iWd   
     bm03493   248    VDAKaIFtGHSAVVEDVAWHLLHESLFGSVADDQKLMIWD    287  

PF00400.22.ls: domain 3 of 5, from 294 to 333: score 41.0, E = 3.8e-09
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       ++ +  ++Ht+ V+c++f+p s  +la+gS+D+t+ +Wd   
     bm03493   294    SKPShLVdAHTAEVNCLSFNPYSEFILATGSADKTVALWD    333  

PF00400.22.fs: domain 3 of 5, from 294 to 333: score 39.0, E = 5.2e-10
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       ++ +  ++Ht+ V+c++f+p s  +la+gS+D+t+ +Wd   
     bm03493   294    SKPShLVdAHTAEVNCLSFNPYSEFILATGSADKTVALWD    333  

PF00400.22.fs: domain 4 of 5, from 338 to 377: score 32.3, E = 3.9e-08
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      +  +++++ H++ +  v +sp++ ++las++ D+ + +Wd   
     bm03493   338    KLKLhTFeSHKDEIFQVHWSPHNETILASSGTDRRLNVWD    377  

PF00400.22.ls: domain 4 of 5, from 338 to 377: score 34.3, E = 3.9e-07
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      +  +++++ H++ +  v +sp++ ++las++ D+ + +Wd   
     bm03493   338    KLKLhTFeSHKDEIFQVHWSPHNETILASSGTDRRLNVWD    377  

PF00400.22.fs: domain 5 of 5, from 395 to 434: score 28.6, E = 4.5e-07
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       e++ + +gHt+ +++ +++p+++ +++s S+D+   iW    
     bm03493   395    PELLfIHgGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQ    434  

PF00400.22.ls: domain 5 of 5, from 395 to 434: score 30.6, E = 5.3e-06
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       e++ + +gHt+ +++ +++p+++ +++s S+D+   iW    
     bm03493   395    PELLfIHgGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQ    434  

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