hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-16281743/chunk_1/iprscan-20080807-16281743.nocrc
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Query sequence: bm03493
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00320                                                 184.8    8.3e-51   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00320    1/6     145   184 ..     1    46 []    12.9      4.5
SM00320    2/6     197   237 ..     1    46 []    33.4  3.2e-05
SM00320    3/6     247   287 ..     1    46 []    22.2    0.074
SM00320    4/6     293   333 ..     1    46 []    45.9  5.5e-09
SM00320    5/6     337   377 ..     1    46 []    39.4  4.8e-07
SM00320    6/6     394   434 ..     1    46 []    31.1  0.00015

Alignments of top-scoring domains:
SM00320: domain 1 of 6, from 145 to 184: score 12.9, E = 4.5
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      + ++  +++ H+g  +V+  ++ p +     p+++a+  + + + ++
     bm03493   145    KiECEIKIN-HEG--EVNRARYMPQN-----PHIIATKTpSSDVLVF 183  

                   d<-*
                   d   
     bm03493   184 D    184  

SM00320: domain 2 of 6, from 197 to 237: score 33.4, E = 3.2e-05
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      + ++   l+gH++  + ++++++++      + +l+s+s+D+t++lW
     bm03493   197    EcNPDLRLRGHQK--EGYGLSWNSNL-----SGHLLSASdDHTVCLW 236  

                   d<-*
                   d   
     bm03493   237 D    237  

SM00320: domain 3 of 6, from 247 to 287: score 22.2, E = 0.074
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                           ++++gH++   V +va++  +     ++l+ s  +D ++ +W
     bm03493   247    IvDAKAIFTGHSA--VVEDVAWHLLH-----ESLFGSVAdDQKLMIW 286  

                   d<-*
                   d   
     bm03493   287 D    287  

SM00320: domain 4 of 6, from 293 to 333: score 45.9, E = 5.5e-09
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t+k+ +  ++Ht+  +V++++f+p +     + +la+gs D+t+ lW
     bm03493   293    TsKPSHLVDAHTA--EVNCLSFNPYS-----EFILATGSaDKTVALW 332  

                   d<-*
                   d   
     bm03493   333 D    333  

SM00320: domain 5 of 6, from 337 to 377: score 39.4, E = 4.8e-07
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       +  l+t++ H++  ++  v +sp++     +++las+++D+ + +W
     bm03493   337    LkLKLHTFESHKD--EIFQVHWSPHN-----ETILASSGtDRRLNVW 376  

                   d<-*
                   d   
     bm03493   377 D    377  

SM00320: domain 6 of 6, from 394 to 434: score 31.1, E = 0.00015
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +++ll++  gHt+   +++ +++p+      p +++s s+D+   +W
     bm03493   394    PpELLFIHGGHTA--KISDFSWNPNE-----PWVICSVSeDNIMQIW 433  

                   d<-*
                       
     bm03493   434 Q    434  

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