hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-16341566/chunk_1/iprscan-20080807-16341566.nocrc
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Query sequence: bm03494
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF03166.5.ls MH2 domain                                     413.1   3.7e-121   1
PF03166.5.fs MH2 domain                                     411.3   1.2e-120   1
PF03165.7.ls MH1 domain                                     228.3    1.6e-65   1
PF03165.7.fs MH1 domain                                     226.5    5.6e-65   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF03165.7.fs   1/1      54   158 ..     1   120 []   226.5  5.6e-65
PF03165.7.ls   1/1      54   158 ..     1   120 []   228.3  1.6e-65
PF03166.5.fs   1/1     253   431 ..     1   228 []   411.3 1.2e-120
PF03166.5.ls   1/1     253   431 ..     1   228 []   413.1 3.7e-121

Alignments of top-scoring domains:
PF03165.7.fs: domain 1 of 1, from 54 to 158: score 226.5, E = 5.6e-65
                   *->ekwlekavesLlKKLKkkkqqleeLlqAVeSrGdppktkCvtIpnrs
                      ekw+ekav++L+KKLKkkk+++eeL++A+++  ++p + CvtIp rs
     bm03494    54    EKWAEKAVDALVKKLKKKKGAMEELEKALSCP-GQP-SNCVTIP-RS 97   

                   LdGRLqvnaqrkglPHviyCLRqadRlwRWPDLqsqnELKaiptCeyagf
                   LdGRLqv ++rkglPHviyC     R+wRWPDLqs++ELK++++Ce++ f
     bm03494    98 LDGRLQV-SHRKGLPHVIYC-----RVWRWPDLQSHHELKPLECCEFP-F 140  

                   eskkdeaCnPyvCiNPYHysRve<-*
                    sk++e     vCiNPYHy+Rve   
     bm03494   141 GSKQKE-----VCINPYHYKRVE    158  

PF03165.7.ls: domain 1 of 1, from 54 to 158: score 228.3, E = 1.6e-65
                   *->ekwlekavesLlKKLKkkkqqleeLlqAVeSrGdppktkCvtIpnrs
                      ekw+ekav++L+KKLKkkk+++eeL++A+++  ++p + CvtIp rs
     bm03494    54    EKWAEKAVDALVKKLKKKKGAMEELEKALSCP-GQP-SNCVTIP-RS 97   

                   LdGRLqvnaqrkglPHviyCLRqadRlwRWPDLqsqnELKaiptCeyagf
                   LdGRLqv ++rkglPHviyC     R+wRWPDLqs++ELK++++Ce++ f
     bm03494    98 LDGRLQV-SHRKGLPHVIYC-----RVWRWPDLQSHHELKPLECCEFP-F 140  

                   eskkdeaCnPyvCiNPYHysRve<-*
                    sk++e     vCiNPYHy+Rve   
     bm03494   141 GSKQKE-----VCINPYHYKRVE    158  

PF03166.5.fs: domain 1 of 1, from 253 to 431: score 411.3, E = 1.2e-120
                   *->ysepesWcsIaYyElntrVGEtfkvsgnDavsvtvDGftARtDpsge
                      y+ep++WcsI+YyEln rVGE f++s++   sv+vDGft   Dps+ 
     bm03494   253    YEEPKHWCSIVYYELNNRVGEAFHASST---SVLVDGFT---DPSN- 292  

                   nedRfCLGqLsNvnRqiseaiektRrhIGkGVrLsykadGemhVwvyNrS
                   n +RfCLG+LsNvnR  +++ie+tRrhIGkGV+L+y+ +Ge  V+++++S
     bm03494   293 NKNRFCLGLLSNVNR--NSTIENTRRHIGKGVHLYYV-GGE--VYAECLS 337  

                   dspIFVqSpyLdepaGGfrpldkVhKvpPgaslKvFdfrkfyqllrqaan
                   ds IFVqS+++++++G f+p+ +V+K+p g+slK+F++++f+qll q++n
     bm03494   338 DSSIFVQSRNCNYHHG-FHPT-TVCKIPSGCSLKIFNNQEFAQLLAQSVN 385  

                   sgfeAtaaQAAAvaGklppsnyiyekktqeeLrreAtegvdeLskmCtiR
                   +gfe                                   v+eL+kmCtiR
     bm03494   386 HGFET----------------------------------VYELTKMCTIR 401  

                   iSFVKGWGedYPqRQdItstPCWiEvhLnrp<-*
                   +SFVKGWG++Y +RQd+tstPCWiE+hL++p   
     bm03494   402 MSFVKGWGAEY-HRQDVTSTPCWIEIHLHGP    431  

PF03166.5.ls: domain 1 of 1, from 253 to 431: score 413.1, E = 3.7e-121
                   *->ysepesWcsIaYyElntrVGEtfkvsgnDavsvtvDGftARtDpsge
                      y+ep++WcsI+YyEln rVGE f++s++   sv+vDGft   Dps+ 
     bm03494   253    YEEPKHWCSIVYYELNNRVGEAFHASST---SVLVDGFT---DPSN- 292  

                   nedRfCLGqLsNvnRqiseaiektRrhIGkGVrLsykadGemhVwvyNrS
                   n +RfCLG+LsNvnR  +++ie+tRrhIGkGV+L+y+ +Ge  V+++++S
     bm03494   293 NKNRFCLGLLSNVNR--NSTIENTRRHIGKGVHLYYV-GGE--VYAECLS 337  

                   dspIFVqSpyLdepaGGfrpldkVhKvpPgaslKvFdfrkfyqllrqaan
                   ds IFVqS+++++++G f+p+ +V+K+p g+slK+F++++f+qll q++n
     bm03494   338 DSSIFVQSRNCNYHHG-FHPT-TVCKIPSGCSLKIFNNQEFAQLLAQSVN 385  

                   sgfeAtaaQAAAvaGklppsnyiyekktqeeLrreAtegvdeLskmCtiR
                   +gfe                                   v+eL+kmCtiR
     bm03494   386 HGFET----------------------------------VYELTKMCTIR 401  

                   iSFVKGWGedYPqRQdItstPCWiEvhLnrp<-*
                   +SFVKGWG++Y +RQd+tstPCWiE+hL++p   
     bm03494   402 MSFVKGWGAEY-HRQDVTSTPCWIEIHLHGP    431  

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