hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-16401834/chunk_1/iprscan-20080807-16401834.nocrc
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Query sequence: bm03528
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02225.12.fs PA domain                                       77.9    1.2e-22   1
PF02225.12.ls PA domain                                       79.8    7.8e-21   1
PF00097.15.fs Zinc finger, C3HC4 type (RING finger)           40.6      8e-14   1
PF00097.15.ls Zinc finger, C3HC4 type (RING finger)           42.4    1.5e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02225.12.fs   1/1      88   186 ..     1   111 []    77.9  1.2e-22
PF02225.12.ls   1/1      88   186 ..     1   111 []    79.8  7.8e-21
PF00097.15.fs   1/1     281   321 ..     1    50 []    40.6    8e-14
PF00097.15.ls   1/1     281   321 ..     1    50 []    42.4  1.5e-09

Alignments of top-scoring domains:
PF02225.12.fs: domain 1 of 1, from 88 to 186: score 77.9, E = 1.2e-22
                   *->sp.ggktgpLVyagdgsnsdfsaCesrpgsldpkdvkGKIVLcdrGg
                       ++ ++  pL  + d +     +C++ + ++ p+++k +I+L +rG+
     bm03528    88    RGqVLAPLPLHGVADHL-----GCDPQTRFFVPPNIKQWIALLQRGN 129  

                   csfaeKaanAqaAGAaGvIiynnpddglevmapetdsndkkdpdshgiPa
                   c+f+eK+  A+ ++A++v+iynn++ +++v++        ++p +++i a
     bm03528   130 CTFKEKISRAAFHNAVAVVIYNNKSKEEPVTM--------THPGTGDIIA 171  

                   vfvskedGeallsyi<-*
                   v++++  G+++lsy+   
     bm03528   172 VMITELRGKDILSYL    186  

PF02225.12.ls: domain 1 of 1, from 88 to 186: score 79.8, E = 7.8e-21
                   *->sp.ggktgpLVyagdgsnsdfsaCesrpgsldpkdvkGKIVLcdrGg
                       ++ ++  pL  + d +     +C++ + ++ p+++k +I+L +rG+
     bm03528    88    RGqVLAPLPLHGVADHL-----GCDPQTRFFVPPNIKQWIALLQRGN 129  

                   csfaeKaanAqaAGAaGvIiynnpddglevmapetdsndkkdpdshgiPa
                   c+f+eK+  A+ ++A++v+iynn++ +++v++        ++p +++i a
     bm03528   130 CTFKEKISRAAFHNAVAVVIYNNKSKEEPVTM--------THPGTGDIIA 171  

                   vfvskedGeallsyi<-*
                   v++++  G+++lsy+   
     bm03528   172 VMITELRGKDILSYL    186  

PF00097.15.fs: domain 1 of 1, from 281 to 321: score 40.6, E = 8e-14
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgnttC
                      C++C e +k++   +  ilpC+H      f++sC+  wls  + +tC
     bm03528   281    CAVCIESYKQND--VVRILPCKHV-----FHKSCVDPWLS--EHCTC 318  

                   plC<-*
                   p+C   
     bm03528   319 PMC    321  

PF00097.15.ls: domain 1 of 1, from 281 to 321: score 42.4, E = 1.5e-09
                   *->CrICleelkepsndfplilpCgHsGslkyfCrsClerwlsssgnttC
                      C++C e +k++   +  ilpC+H      f++sC+  wls  + +tC
     bm03528   281    CAVCIESYKQND--VVRILPCKHV-----FHKSCVDPWLS--EHCTC 318  

                   plC<-*
                   p+C   
     bm03528   319 PMC    321  

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