hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080807/iprscan-20080807-16470173/chunk_1/iprscan-20080807-16470173.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: bm03544 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00903.15.fs Glyoxalase/Bleomycin resistance protein/Di 154.4 8.4e-45 1 PF00903.15.ls Glyoxalase/Bleomycin resistance protein/Di 156.2 7.6e-44 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00903.15.fs 1/1 35 178 .. 1 149 [] 154.4 8.4e-45 PF00903.15.ls 1/1 35 178 .. 1 149 [] 156.2 7.6e-44 Alignments of top-scoring domains: PF00903.15.fs: domain 1 of 1, from 35 to 178: score 154.4, E = 8.4e-45 *->ridHvanlrVgDleksldFYtdvLGfklveetdNd.e.kysLyFl.y + +++ lrV+D++ksldFYt+vLG++l+ + d ++ k+sLyFl y bm03544 35 LLQQTM-LRVKDPKKSLDFYTRVLGMTLIQKCD-FpImKFSLYFLaY 79 .ddditgeegglryafftagg.vleLtlnetppppaagfi.k.girefde +d+ + ++e + ++a++++ leLt+n+++++++++ +++++ bm03544 80 eDKNDIPKEKDEKIAWALSRKaTLELTHNWGTEDDETQSYhNgN------ 123 gglhhiafiafsvdDvdaaydrlkaaGvkivrepgrhgwggrysfyvhfr + +++++i+++v Dv+ a++r+++ Gvk+v+ p+++++ g+++ ++ bm03544 124 SDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGKMKGLAF----IQ 169 DPdGnliEl<-* DPdG++iE+ bm03544 170 DPDGYWIEI 178 PF00903.15.ls: domain 1 of 1, from 35 to 178: score 156.2, E = 7.6e-44 *->ridHvanlrVgDleksldFYtdvLGfklveetdNd.e.kysLyFl.y + +++ lrV+D++ksldFYt+vLG++l+ + d ++ k+sLyFl y bm03544 35 LLQQTM-LRVKDPKKSLDFYTRVLGMTLIQKCD-FpImKFSLYFLaY 79 .ddditgeegglryafftagg.vleLtlnetppppaagfi.k.girefde +d+ + ++e + ++a++++ leLt+n+++++++++ +++++ bm03544 80 eDKNDIPKEKDEKIAWALSRKaTLELTHNWGTEDDETQSYhNgN------ 123 gglhhiafiafsvdDvdaaydrlkaaGvkivrepgrhgwggrysfyvhfr + +++++i+++v Dv+ a++r+++ Gvk+v+ p+++++ g+++ ++ bm03544 124 SDPRGFGHIGIAVPDVYSACKRFEELGVKFVKKPDDGKMKGLAF----IQ 169 DPdGnliEl<-* DPdG++iE+ bm03544 170 DPDGYWIEI 178 //