# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Obm03574.fasta.nr -Q bm03574.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 bm03574, 481 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6823876 sequences Expectation_n fit: rho(ln(x))= 5.2871+/-0.000189; mu= 11.0229+/- 0.011 mean_var=75.3571+/-14.448, 0's: 36 Z-trim: 38 B-trim: 244 in 1/65 Lambda= 0.147745 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|62089190|dbj|BAD93039.1| RaP2 interacting prote ( 481) 3194 690.1 2.8e-196 gi|172045944|sp|Q59EK9.2|RUN3A_HUMAN RUN domain-co ( 446) 2919 631.5 1.2e-178 gi|75041065|sp|Q5R565.1|RUN3A_PONAB RUN domain-con ( 446) 2914 630.4 2.4e-178 gi|149054376|gb|EDM06193.1| Rap2 interacting prote ( 446) 2831 612.7 5.1e-173 gi|81861002|sp|O08576.1|RUN3A_MOUSE RUN domain-con ( 446) 2822 610.8 1.9e-172 gi|168823439|ref|NP_942053.2| Rap2 interacting pro ( 454) 2805 607.2 2.4e-171 gi|122144647|sp|Q17QK1.1|RUN3A_BOVIN RUN domain-co ( 441) 2800 606.1 5e-171 gi|148702172|gb|EDL34119.1| Rap2 interacting prote ( 451) 2659 576.1 5.6e-162 gi|119571997|gb|EAW51612.1| RaP2 interacting prote ( 406) 2625 568.8 7.9e-160 gi|3005755|gb|AAC09366.1| RaP2 interacting protein ( 405) 2608 565.2 9.7e-159 gi|2352022|gb|AAB68767.1| RaP2 interacting protein ( 400) 2550 552.8 5e-155 gi|31873388|emb|CAD97685.1| hypothetical protein [ ( 400) 2544 551.5 1.2e-154 gi|123243112|emb|CAM18004.1| RUN domain containing ( 405) 2511 544.5 1.6e-152 gi|28279470|gb|AAH46319.1| Rundc3a protein [Mus mu ( 413) 2485 539.0 7.7e-151 gi|126308470|ref|XP_001374798.1| PREDICTED: simila ( 458) 2482 538.4 1.3e-150 gi|123243111|emb|CAM18003.1| RUN domain containing ( 400) 2453 532.1 8.5e-149 gi|119850769|gb|AAI27473.1| Rap2ip protein [Rattus ( 394) 2431 527.4 2.2e-147 gi|194216824|ref|XP_001917414.1| PREDICTED: RUN do ( 406) 2408 522.6 6.6e-146 gi|149054378|gb|EDM06195.1| Rap2 interacting prote ( 403) 2396 520.0 3.9e-145 gi|148702171|gb|EDL34118.1| Rap2 interacting prote ( 399) 2387 518.1 1.4e-144 gi|6599248|emb|CAB63771.1| hypothetical protein [H ( 364) 2364 513.1 4e-143 gi|123906207|sp|Q0V9V7.1|RUN3A_XENTR RUN domain-co ( 440) 2326 505.1 1.3e-140 gi|119571996|gb|EAW51611.1| RaP2 interacting prote ( 332) 2172 472.2 7.8e-131 gi|114666867|ref|XP_001140468.1| PREDICTED: hypoth ( 454) 2113 459.7 6.1e-127 gi|47217825|emb|CAG07239.1| unnamed protein produc ( 458) 2068 450.1 4.7e-124 gi|165971596|gb|AAI58573.1| Rap2ip protein [Rattus ( 324) 2052 446.6 3.9e-123 gi|149054377|gb|EDM06194.1| Rap2 interacting prote ( 400) 2037 443.5 4.2e-122 gi|148702174|gb|EDL34121.1| Rap2 interacting prote ( 400) 2033 442.6 7.5e-122 gi|189516961|ref|XP_001922267.1| PREDICTED: simila ( 437) 2007 437.1 3.8e-120 gi|149054379|gb|EDM06196.1| Rap2 interacting prote ( 285) 1809 394.8 1.4e-107 gi|148702175|gb|EDL34122.1| Rap2 interacting prote ( 285) 1805 393.9 2.5e-107 gi|171854990|sp|A7YDW0.1|RUN3A_DANRE RUN domain-co ( 428) 1777 388.1 2.1e-105 gi|27882335|gb|AAH44502.1| Rap2 interacting protei ( 428) 1769 386.4 6.9e-105 gi|73965534|ref|XP_537621.2| PREDICTED: similar to ( 371) 1680 367.4 3.2e-99 gi|119597342|gb|EAW76936.1| Rap2-binding protein 9 ( 454) 1480 324.8 2.5e-86 gi|47219726|emb|CAG12648.1| unnamed protein produc ( 439) 1436 315.4 1.6e-83 gi|149029025|gb|EDL84319.1| rCG41069 [Rattus norve ( 452) 1344 295.8 1.3e-77 gi|75076664|sp|Q4R7B9.1|RUN3B_MACFA RUN domain-con ( 456) 1340 294.9 2.4e-77 gi|114614356|ref|XP_001163673.1| PREDICTED: hypoth ( 456) 1335 293.9 5.1e-77 gi|148682729|gb|EDL14676.1| gene model 440, (NCBI) ( 457) 1335 293.9 5.1e-77 gi|75040749|sp|Q5NVC2.1|RUN3B_PONAB RUN domain-con ( 456) 1330 292.8 1.1e-76 gi|82179968|sp|Q5U3W3.1|RUN3B_DANRE RUN domain-con ( 450) 1313 289.2 1.3e-75 gi|109067604|ref|XP_001105352.1| PREDICTED: simila ( 411) 1249 275.5 1.6e-71 gi|38383176|gb|AAH62503.1| Hypothetical protein MG ( 310) 1241 273.7 4.1e-71 gi|109067602|ref|XP_001105497.1| PREDICTED: simila ( 406) 1216 268.5 2e-69 gi|114614360|ref|XP_001163605.1| PREDICTED: hypoth ( 406) 1212 267.6 3.6e-69 gi|53136644|emb|CAG32651.1| hypothetical protein [ ( 313) 1209 266.9 4.6e-69 gi|126341314|ref|XP_001368567.1| PREDICTED: simila ( 408) 1202 265.5 1.6e-68 gi|81885614|sp|Q6PDC0.1|RUN3B_MOUSE RUN domain-con ( 408) 1201 265.3 1.9e-68 gi|123780333|sp|Q3B7K9.1|RUN3B_RAT RUN domain-cont ( 403) 1199 264.9 2.5e-68 >>gi|62089190|dbj|BAD93039.1| RaP2 interacting protein 8 (481 aa) initn: 3194 init1: 3194 opt: 3194 Z-score: 3679.1 bits: 690.1 E(): 2.8e-196 Smith-Waterman score: 3194; 100.000% identity (100.000% similar) in 481 aa overlap (1-481:1-481) 10 20 30 40 50 60 bm0357 GAPSDRGPSRDPATGLGLREGWGGSGRRQQWPHIWMEASFVQTTMALGLSSKKASSRNVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 GAPSDRGPSRDPATGLGLREGWGGSGRRQQWPHIWMEASFVQTTMALGLSSKKASSRNVA 10 20 30 40 50 60 70 80 90 100 110 120 bm0357 VERKNLITVCRFSVKTLLEKYTAEPIDDSSEEFVNFAAILEQILSHRFKACAPAGPVSWF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 VERKNLITVCRFSVKTLLEKYTAEPIDDSSEEFVNFAAILEQILSHRFKACAPAGPVSWF 70 80 90 100 110 120 130 140 150 160 170 180 bm0357 SSDGQRGFWDYIRLACSKVPNNCVSSIENMENISTARAKGRAWIRVALMEKRMSEYITTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 SSDGQRGFWDYIRLACSKVPNNCVSSIENMENISTARAKGRAWIRVALMEKRMSEYITTA 130 140 150 160 170 180 190 200 210 220 230 240 bm0357 LRDTRTTRRFYDSGAIMLRDEATILTGMLIGLSAIDFSFCLKGEVLDGKTPVVIDYTPYL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 LRDTRTTRRFYDSGAIMLRDEATILTGMLIGLSAIDFSFCLKGEVLDGKTPVVIDYTPYL 190 200 210 220 230 240 250 260 270 280 290 300 bm0357 KFTQSYDYLTDEEERHSAESSTSEDNSPEHPYLPLVTDEDSWYSKWHKMEQKFRIVYAQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 KFTQSYDYLTDEEERHSAESSTSEDNSPEHPYLPLVTDEDSWYSKWHKMEQKFRIVYAQK 250 260 270 280 290 300 310 320 330 340 350 360 bm0357 GYLEELVRLRESQLKDLEAENRRLQLQLEEAAAQNQREKRELEGVILELQEQLTGLIPSD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 GYLEELVRLRESQLKDLEAENRRLQLQLEEAAAQNQREKRELEGVILELQEQLTGLIPSD 310 320 330 340 350 360 370 380 390 400 410 420 bm0357 HAPLAQGSKELTTPLVNQWPSLGTLNGAEGASNSKLYRRHSFMSTEPLSAEASLSSDSQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 HAPLAQGSKELTTPLVNQWPSLGTLNGAEGASNSKLYRRHSFMSTEPLSAEASLSSDSQR 370 380 390 400 410 420 430 440 450 460 470 480 bm0357 LGEGTRDEEPWGPIGKDPTPSMLGLCGSLASIPSCKSLASFKSNECLVSDSPEGSPALSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 LGEGTRDEEPWGPIGKDPTPSMLGLCGSLASIPSCKSLASFKSNECLVSDSPEGSPALSP 430 440 450 460 470 480 bm0357 S : gi|620 S >>gi|172045944|sp|Q59EK9.2|RUN3A_HUMAN RUN domain-contai (446 aa) initn: 2919 init1: 2919 opt: 2919 Z-score: 3362.7 bits: 631.5 E(): 1.2e-178 Smith-Waterman score: 2919; 100.000% identity (100.000% similar) in 446 aa overlap (36-481:1-446) 10 20 30 40 50 60 bm0357 RGPSRDPATGLGLREGWGGSGRRQQWPHIWMEASFVQTTMALGLSSKKASSRNVAVERKN :::::::::::::::::::::::::::::: gi|172 MEASFVQTTMALGLSSKKASSRNVAVERKN 10 20 30 70 80 90 100 110 120 bm0357 LITVCRFSVKTLLEKYTAEPIDDSSEEFVNFAAILEQILSHRFKACAPAGPVSWFSSDGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|172 LITVCRFSVKTLLEKYTAEPIDDSSEEFVNFAAILEQILSHRFKACAPAGPVSWFSSDGQ 40 50 60 70 80 90 130 140 150 160 170 180 bm0357 RGFWDYIRLACSKVPNNCVSSIENMENISTARAKGRAWIRVALMEKRMSEYITTALRDTR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|172 RGFWDYIRLACSKVPNNCVSSIENMENISTARAKGRAWIRVALMEKRMSEYITTALRDTR 100 110 120 130 140 150 190 200 210 220 230 240 bm0357 TTRRFYDSGAIMLRDEATILTGMLIGLSAIDFSFCLKGEVLDGKTPVVIDYTPYLKFTQS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|172 TTRRFYDSGAIMLRDEATILTGMLIGLSAIDFSFCLKGEVLDGKTPVVIDYTPYLKFTQS 160 170 180 190 200 210 250 260 270 280 290 300 bm0357 YDYLTDEEERHSAESSTSEDNSPEHPYLPLVTDEDSWYSKWHKMEQKFRIVYAQKGYLEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|172 YDYLTDEEERHSAESSTSEDNSPEHPYLPLVTDEDSWYSKWHKMEQKFRIVYAQKGYLEE 220 230 240 250 260 270 310 320 330 340 350 360 bm0357 LVRLRESQLKDLEAENRRLQLQLEEAAAQNQREKRELEGVILELQEQLTGLIPSDHAPLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|172 LVRLRESQLKDLEAENRRLQLQLEEAAAQNQREKRELEGVILELQEQLTGLIPSDHAPLA 280 290 300 310 320 330 370 380 390 400 410 420 bm0357 QGSKELTTPLVNQWPSLGTLNGAEGASNSKLYRRHSFMSTEPLSAEASLSSDSQRLGEGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|172 QGSKELTTPLVNQWPSLGTLNGAEGASNSKLYRRHSFMSTEPLSAEASLSSDSQRLGEGT 340 350 360 370 380 390 430 440 450 460 470 480 bm0357 RDEEPWGPIGKDPTPSMLGLCGSLASIPSCKSLASFKSNECLVSDSPEGSPALSPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|172 RDEEPWGPIGKDPTPSMLGLCGSLASIPSCKSLASFKSNECLVSDSPEGSPALSPS 400 410 420 430 440 >>gi|75041065|sp|Q5R565.1|RUN3A_PONAB RUN domain-contain (446 aa) initn: 2914 init1: 2914 opt: 2914 Z-score: 3357.0 bits: 630.4 E(): 2.4e-178 Smith-Waterman score: 2914; 99.776% identity (100.000% similar) in 446 aa overlap (36-481:1-446) 10 20 30 40 50 60 bm0357 RGPSRDPATGLGLREGWGGSGRRQQWPHIWMEASFVQTTMALGLSSKKASSRNVAVERKN ::.::::::::::::::::::::::::::: gi|750 METSFVQTTMALGLSSKKASSRNVAVERKN 10 20 30 70 80 90 100 110 120 bm0357 LITVCRFSVKTLLEKYTAEPIDDSSEEFVNFAAILEQILSHRFKACAPAGPVSWFSSDGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 LITVCRFSVKTLLEKYTAEPIDDSSEEFVNFAAILEQILSHRFKACAPAGPVSWFSSDGQ 40 50 60 70 80 90 130 140 150 160 170 180 bm0357 RGFWDYIRLACSKVPNNCVSSIENMENISTARAKGRAWIRVALMEKRMSEYITTALRDTR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 RGFWDYIRLACSKVPNNCVSSIENMENISTARAKGRAWIRVALMEKRMSEYITTALRDTR 100 110 120 130 140 150 190 200 210 220 230 240 bm0357 TTRRFYDSGAIMLRDEATILTGMLIGLSAIDFSFCLKGEVLDGKTPVVIDYTPYLKFTQS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 TTRRFYDSGAIMLRDEATILTGMLIGLSAIDFSFCLKGEVLDGKTPVVIDYTPYLKFTQS 160 170 180 190 200 210 250 260 270 280 290 300 bm0357 YDYLTDEEERHSAESSTSEDNSPEHPYLPLVTDEDSWYSKWHKMEQKFRIVYAQKGYLEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 YDYLTDEEERHSAESSTSEDNSPEHPYLPLVTDEDSWYSKWHKMEQKFRIVYAQKGYLEE 220 230 240 250 260 270 310 320 330 340 350 360 bm0357 LVRLRESQLKDLEAENRRLQLQLEEAAAQNQREKRELEGVILELQEQLTGLIPSDHAPLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 LVRLRESQLKDLEAENRRLQLQLEEAAAQNQREKRELEGVILELQEQLTGLIPSDHAPLA 280 290 300 310 320 330 370 380 390 400 410 420 bm0357 QGSKELTTPLVNQWPSLGTLNGAEGASNSKLYRRHSFMSTEPLSAEASLSSDSQRLGEGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 QGSKELTTPLVNQWPSLGTLNGAEGASNSKLYRRHSFMSTEPLSAEASLSSDSQRLGEGT 340 350 360 370 380 390 430 440 450 460 470 480 bm0357 RDEEPWGPIGKDPTPSMLGLCGSLASIPSCKSLASFKSNECLVSDSPEGSPALSPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 RDEEPWGPIGKDPTPSMLGLCGSLASIPSCKSLASFKSNECLVSDSPEGSPALSPS 400 410 420 430 440 >>gi|149054376|gb|EDM06193.1| Rap2 interacting protein, (446 aa) initn: 2831 init1: 2831 opt: 2831 Z-score: 3261.3 bits: 612.7 E(): 5.1e-173 Smith-Waterman score: 2831; 96.637% identity (98.655% similar) in 446 aa overlap (36-481:1-446) 10 20 30 40 50 60 bm0357 RGPSRDPATGLGLREGWGGSGRRQQWPHIWMEASFVQTTMALGLSSKKASSRNVAVERKN :::::::::::::: ::::::::: :::.: gi|149 MEASFVQTTMALGLPSKKASSRNVIVERRN 10 20 30 70 80 90 100 110 120 bm0357 LITVCRFSVKTLLEKYTAEPIDDSSEEFVNFAAILEQILSHRFKACAPAGPVSWFSSDGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 LITVCRFSVKTLLEKYTAEPIDDSSEEFVNFAAILEQILSHRFKACAPAGPVSWFSSDGQ 40 50 60 70 80 90 130 140 150 160 170 180 bm0357 RGFWDYIRLACSKVPNNCVSSIENMENISTARAKGRAWIRVALMEKRMSEYITTALRDTR ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.: gi|149 RGFWDYIRLACSKVPNNCVSSIENMENISTARAKGRAWIRVALMEKRMSEYITTALRDNR 100 110 120 130 140 150 190 200 210 220 230 240 bm0357 TTRRFYDSGAIMLRDEATILTGMLIGLSAIDFSFCLKGEVLDGKTPVVIDYTPYLKFTQS ::::::::::::::.:::.::::::::::::::::::::::::::::::::::::::::: gi|149 TTRRFYDSGAIMLREEATVLTGMLIGLSAIDFSFCLKGEVLDGKTPVVIDYTPYLKFTQS 160 170 180 190 200 210 250 260 270 280 290 300 bm0357 YDYLTDEEERHSAESSTSEDNSPEHPYLPLVTDEDSWYSKWHKMEQKFRIVYAQKGYLEE ::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::: gi|149 YDYLTDEEERHSAESSTSEDNSPEHPYLPLVTDEDSWYNKWHKMEQKFRIVYAQKGYLEE 220 230 240 250 260 270 310 320 330 340 350 360 bm0357 LVRLRESQLKDLEAENRRLQLQLEEAAAQNQREKRELEGVILELQEQLTGLIPSDHAPLA :::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::: gi|149 LVRLRESQLKDLEAENRRLQLQLEEAAAQNQREKRELEGVILELQEQLTGLIPGDHAPLA 280 290 300 310 320 330 370 380 390 400 410 420 bm0357 QGSKELTTPLVNQWPSLGTLNGAEGASNSKLYRRHSFMSTEPLSAEASLSSDSQRLGEGT :::::::: ::::::::.::. ::::::::.::::::::::::::::::::::::::: gi|149 QGSKELTTALVNQWPSLSTLSRPEGASNSKLFRRHSFMSTEPLSAEASLSSDSQRLGEGK 340 350 360 370 380 390 430 440 450 460 470 480 bm0357 RDEEPWGPIGKDPTPSMLGLCGSLASIPSCKSLASFKSNECLVSDSPEGSPALSPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 RDEEPWGPIGKDPTPSMLGLCGSLASIPSCKSLASFKSNECLVSDSPEGSPALSPS 400 410 420 430 440 >>gi|81861002|sp|O08576.1|RUN3A_MOUSE RUN domain-contain (446 aa) initn: 2822 init1: 2822 opt: 2822 Z-score: 3251.0 bits: 610.8 E(): 1.9e-172 Smith-Waterman score: 2822; 96.413% identity (98.655% similar) in 446 aa overlap (36-481:1-446) 10 20 30 40 50 60 bm0357 RGPSRDPATGLGLREGWGGSGRRQQWPHIWMEASFVQTTMALGLSSKKASSRNVAVERKN :::::::::::::: ::::::::: :::.: gi|818 MEASFVQTTMALGLPSKKASSRNVIVERRN 10 20 30 70 80 90 100 110 120 bm0357 LITVCRFSVKTLLEKYTAEPIDDSSEEFVNFAAILEQILSHRFKACAPAGPVSWFSSDGQ :::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::: gi|818 LITVCRFSVKTLLEKYTAEPIDDSSEEFVNFAAILEQILSHRFKACAPAGPASWFSSDGQ 40 50 60 70 80 90 130 140 150 160 170 180 bm0357 RGFWDYIRLACSKVPNNCVSSIENMENISTARAKGRAWIRVALMEKRMSEYITTALRDTR ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.: gi|818 RGFWDYIRLACSKVPNNCVSSIENMENISTARAKGRAWIRVALMEKRMSEYITTALRDNR 100 110 120 130 140 150 190 200 210 220 230 240 bm0357 TTRRFYDSGAIMLRDEATILTGMLIGLSAIDFSFCLKGEVLDGKTPVVIDYTPYLKFTQS ::::::::::::::.:::.::::::::::::::::::::::::::::::::::::::::: gi|818 TTRRFYDSGAIMLREEATVLTGMLIGLSAIDFSFCLKGEVLDGKTPVVIDYTPYLKFTQS 160 170 180 190 200 210 250 260 270 280 290 300 bm0357 YDYLTDEEERHSAESSTSEDNSPEHPYLPLVTDEDSWYSKWHKMEQKFRIVYAQKGYLEE ::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::: gi|818 YDYLTDEEERHSAESSTSEDNSPEHPYLPLVTDEDSWYNKWHKMEQKFRIVYAQKGYLEE 220 230 240 250 260 270 310 320 330 340 350 360 bm0357 LVRLRESQLKDLEAENRRLQLQLEEAAAQNQREKRELEGVILELQEQLTGLIPSDHAPLA :::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::: gi|818 LVRLRESQLKDLEAENRRLQLQLEEAAAQNQREKRELEGVILELQEQLTGLIPGDHAPLA 280 290 300 310 320 330 370 380 390 400 410 420 bm0357 QGSKELTTPLVNQWPSLGTLNGAEGASNSKLYRRHSFMSTEPLSAEASLSSDSQRLGEGT :::::::: ::::::::.::. :::::::::::::::::::::::::::::::::::. gi|818 QGSKELTTSLVNQWPSLSTLHRPEGASNSKLYRRHSFMSTEPLSAEASLSSDSQRLGEAK 340 350 360 370 380 390 430 440 450 460 470 480 bm0357 RDEEPWGPIGKDPTPSMLGLCGSLASIPSCKSLASFKSNECLVSDSPEGSPALSPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|818 RDEEPWGPIGKDPTPSMLGLCGSLASIPSCKSLASFKSNECLVSDSPEGSPALSPS 400 410 420 430 440 >>gi|168823439|ref|NP_942053.2| Rap2 interacting protein (454 aa) initn: 2037 init1: 2037 opt: 2805 Z-score: 3231.3 bits: 607.2 E(): 2.4e-171 Smith-Waterman score: 2805; 94.934% identity (96.916% similar) in 454 aa overlap (36-481:1-454) 10 20 30 40 50 60 bm0357 RGPSRDPATGLGLREGWGGSGRRQQWPHIWMEASFVQTTMALGLSSKKASSRNVAVERKN :::::::::::::: ::::::::: :::.: gi|168 MEASFVQTTMALGLPSKKASSRNVIVERRN 10 20 30 70 80 90 100 110 120 bm0357 LITVCRFSVKTLLEKYTAEPIDDSSEEFVNFAAILEQILSHRFKACAPAGPVSWFSSDGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 LITVCRFSVKTLLEKYTAEPIDDSSEEFVNFAAILEQILSHRFKACAPAGPVSWFSSDGQ 40 50 60 70 80 90 130 140 150 160 170 180 bm0357 RGFWDYIRLACSKVPNNCVSSIENMENISTARAKGRAWIRVALMEKRMSEYITTALRDTR ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::.: gi|168 RGFWDYIRLACSKVPNNCVSSIENMENISTARAKGRAWIRVALMEKRMSEYITTALRDNR 100 110 120 130 140 150 190 200 210 220 230 240 bm0357 TTRRFYDSGAIMLRDEATILTGMLIGLSAIDFSFCLKGEVLDGKTPVVIDYTPYLKFTQS ::::::::::::::.:::.::::::::::::::::::::::::::::::::::::::::: gi|168 TTRRFYDSGAIMLREEATVLTGMLIGLSAIDFSFCLKGEVLDGKTPVVIDYTPYLKFTQS 160 170 180 190 200 210 250 260 270 280 290 300 bm0357 YDYLTDEEERHSAESSTSEDNSPEHPYLPLVTDEDSWYSKWHKMEQKFRIVYAQKGYLEE ::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::: gi|168 YDYLTDEEERHSAESSTSEDNSPEHPYLPLVTDEDSWYNKWHKMEQKFRIVYAQKGYLEE 220 230 240 250 260 270 310 320 330 340 350 bm0357 LVRLRESQLKDLEAENRRLQLQLEEAAAQNQREKRELEGVILELQEQL--------TGLI :::::::::::::::::::::::::::::::::::::::::::::::: :::: gi|168 LVRLRESQLKDLEAENRRLQLQLEEAAAQNQREKRELEGVILELQEQLPDPPPPPRTGLI 280 290 300 310 320 330 360 370 380 390 400 410 bm0357 PSDHAPLAQGSKELTTPLVNQWPSLGTLNGAEGASNSKLYRRHSFMSTEPLSAEASLSSD :.:::::::::::::: ::::::::.::. ::::::::.:::::::::::::::::::: gi|168 PGDHAPLAQGSKELTTALVNQWPSLSTLSRPEGASNSKLFRRHSFMSTEPLSAEASLSSD 340 350 360 370 380 390 420 430 440 450 460 470 bm0357 SQRLGEGTRDEEPWGPIGKDPTPSMLGLCGSLASIPSCKSLASFKSNECLVSDSPEGSPA ::::::: :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 SQRLGEGKRDEEPWGPIGKDPTPSMLGLCGSLASIPSCKSLASFKSNECLVSDSPEGSPA 400 410 420 430 440 450 480 bm0357 LSPS :::: gi|168 LSPS >>gi|122144647|sp|Q17QK1.1|RUN3A_BOVIN RUN domain-contai (441 aa) initn: 2806 init1: 2378 opt: 2800 Z-score: 3225.7 bits: 606.1 E(): 5e-171 Smith-Waterman score: 2800; 96.188% identity (98.206% similar) in 446 aa overlap (36-481:1-441) 10 20 30 40 50 60 bm0357 RGPSRDPATGLGLREGWGGSGRRQQWPHIWMEASFVQTTMALGLSSKKASSRNVAVERKN ::::::::::::::::::::::::::::.: gi|122 MEASFVQTTMALGLSSKKASSRNVAVERRN 10 20 30 70 80 90 100 110 120 bm0357 LITVCRFSVKTLLEKYTAEPIDDSSEEFVNFAAILEQILSHRFKACAPAGPVSWFSSDGQ :::::::::::::::::.:::::::::::::::::::::::::: ::::::::::: gi|122 LITVCRFSVKTLLEKYTTEPIDDSSEEFVNFAAILEQILSHRFK-----GPVSWFSSDGQ 40 50 60 70 80 130 140 150 160 170 180 bm0357 RGFWDYIRLACSKVPNNCVSSIENMENISTARAKGRAWIRVALMEKRMSEYITTALRDTR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|122 RGFWDYIRLACSKVPNNCVSSIENMENISTARAKGRAWIRVALMEKRMSEYITTALRDTR 90 100 110 120 130 140 190 200 210 220 230 240 bm0357 TTRRFYDSGAIMLRDEATILTGMLIGLSAIDFSFCLKGEVLDGKTPVVIDYTPYLKFTQS ::::::::::::.:.:::.::::::::::::::::::::::::::::::::::::::::: gi|122 TTRRFYDSGAIMMREEATVLTGMLIGLSAIDFSFCLKGEVLDGKTPVVIDYTPYLKFTQS 150 160 170 180 190 200 250 260 270 280 290 300 bm0357 YDYLTDEEERHSAESSTSEDNSPEHPYLPLVTDEDSWYSKWHKMEQKFRIVYAQKGYLEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|122 YDYLTDEEERHSAESSTSEDNSPEHPYLPLVTDEDSWYSKWHKMEQKFRIVYAQKGYLEE 210 220 230 240 250 260 310 320 330 340 350 360 bm0357 LVRLRESQLKDLEAENRRLQLQLEEAAAQNQREKRELEGVILELQEQLTGLIPSDHAPLA :::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::: gi|122 LVRLRESQLKDLEAENRRLQLQLEEAAAQNQREKRELEGVILELQEQLTGLIPGDHAPLA 270 280 290 300 310 320 370 380 390 400 410 420 bm0357 QGSKELTTPLVNQWPSLGTLNGAEGASNSKLYRRHSFMSTEPLSAEASLSSDSQRLGEGT ::::.::: :::::::::::.:::::.: :::::::::::::::::::::::::::::: gi|122 QGSKDLTTRLVNQWPSLGTLSGAEGANNPKLYRRHSFMSTEPLSAEASLSSDSQRLGEGK 330 340 350 360 370 380 430 440 450 460 470 480 bm0357 RDEEPWGPIGKDPTPSMLGLCGSLASIPSCKSLASFKSNECLVSDSPEGSPALSPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|122 RDEEPWGPIGKDPTPSMLGLCGSLASIPSCKSLASFKSNECLVSDSPEGSPALSPS 390 400 410 420 430 440 >>gi|148702172|gb|EDL34119.1| Rap2 interacting protein, (451 aa) initn: 2671 init1: 2198 opt: 2659 Z-score: 3063.1 bits: 576.1 E(): 5.6e-162 Smith-Waterman score: 2659; 92.308% identity (94.796% similar) in 442 aa overlap (2-435:5-446) 10 20 30 40 50 bm0357 GAPSDRGPSRDPATGLGLREGWGGSGRRQQWPHIWMEASFVQTTMALGLSSKKASSR ::. : :::::: : : ::::::::::::::::::::::::::: ::::::: gi|148 RRRRAPGGRRPSRDPARRAGAPGGVGGSGRRQQWPHIWMEASFVQTTMALGLPSKKASSR 10 20 30 40 50 60 60 70 80 90 100 110 bm0357 NVAVERKNLITVCRFSVKTLLEKYTAEPIDDSSEEFVNFAAILEQILSHRFKACAPAGPV :: :::.::::::::::::::::::::::::::::::::::::::::::::::::::::. gi|148 NVIVERRNLITVCRFSVKTLLEKYTAEPIDDSSEEFVNFAAILEQILSHRFKACAPAGPA 70 80 90 100 110 120 120 130 140 150 160 170 bm0357 SWFSSDGQRGFWDYIRLACSKVPNNCVSSIENMENISTARAKGRAWIRVALMEKRMSEYI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 SWFSSDGQRGFWDYIRLACSKVPNNCVSSIENMENISTARAKGRAWIRVALMEKRMSEYI 130 140 150 160 170 180 180 190 200 210 220 230 bm0357 TTALRDTRTTRRFYDSGAIMLRDEATILTGMLIGLSAIDFSFCLKGEVLDGKTPVVIDYT ::::::.:::::::::::::::.:::.::::::::::::::::::::::::::::::::: gi|148 TTALRDNRTTRRFYDSGAIMLREEATVLTGMLIGLSAIDFSFCLKGEVLDGKTPVVIDYT 190 200 210 220 230 240 240 250 260 270 280 290 bm0357 PYLKFTQSYDYLTDEEERHSAESSTSEDNSPEHPYLPLVTDEDSWYSKWHKMEQKFRIVY ::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::: gi|148 PYLKFTQSYDYLTDEEERHSAESSTSEDNSPEHPYLPLVTDEDSWYNKWHKMEQKFRIVY 250 260 270 280 290 300 300 310 320 330 340 350 bm0357 AQKGYLEELVRLRESQLKDLEAENRRLQLQLEEAAAQNQREKRELEGVILELQEQL---- :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 AQKGYLEELVRLRESQLKDLEAENRRLQLQLEEAAAQNQREKRELEGVILELQEQLPDPP 310 320 330 340 350 360 360 370 380 390 400 bm0357 ----TGLIPSDHAPLAQGSKELTTPLVNQWPSLGTLNGAEGASNSKLYRRHSFMSTEPLS :::::.:::::::::::::: ::::::::.::. ::::::::::::::::::::: gi|148 PPPRTGLIPGDHAPLAQGSKELTTSLVNQWPSLSTLHRPEGASNSKLYRRHSFMSTEPLS 370 380 390 400 410 420 410 420 430 440 450 460 bm0357 AEASLSSDSQRLGEGTRDEEPWGPIGKDPTPSMLGLCGSLASIPSCKSLASFKSNECLVS ::::::::::::::. :::::::::: gi|148 AEASLSSDSQRLGEAKRDEEPWGPIGSSEPN 430 440 450 >>gi|119571997|gb|EAW51612.1| RaP2 interacting protein 8 (406 aa) initn: 2649 init1: 2625 opt: 2625 Z-score: 3024.6 bits: 568.8 E(): 7.9e-160 Smith-Waterman score: 2625; 99.015% identity (99.507% similar) in 406 aa overlap (36-441:1-406) 10 20 30 40 50 60 bm0357 RGPSRDPATGLGLREGWGGSGRRQQWPHIWMEASFVQTTMALGLSSKKASSRNVAVERKN :::::::::::::::::::::::::::::: gi|119 MEASFVQTTMALGLSSKKASSRNVAVERKN 10 20 30 70 80 90 100 110 120 bm0357 LITVCRFSVKTLLEKYTAEPIDDSSEEFVNFAAILEQILSHRFKACAPAGPVSWFSSDGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LITVCRFSVKTLLEKYTAEPIDDSSEEFVNFAAILEQILSHRFKACAPAGPVSWFSSDGQ 40 50 60 70 80 90 130 140 150 160 170 180 bm0357 RGFWDYIRLACSKVPNNCVSSIENMENISTARAKGRAWIRVALMEKRMSEYITTALRDTR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 RGFWDYIRLACSKVPNNCVSSIENMENISTARAKGRAWIRVALMEKRMSEYITTALRDTR 100 110 120 130 140 150 190 200 210 220 230 240 bm0357 TTRRFYDSGAIMLRDEATILTGMLIGLSAIDFSFCLKGEVLDGKTPVVIDYTPYLKFTQS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 TTRRFYDSGAIMLRDEATILTGMLIGLSAIDFSFCLKGEVLDGKTPVVIDYTPYLKFTQS 160 170 180 190 200 210 250 260 270 280 290 300 bm0357 YDYLTDEEERHSAESSTSEDNSPEHPYLPLVTDEDSWYSKWHKMEQKFRIVYAQKGYLEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 YDYLTDEEERHSAESSTSEDNSPEHPYLPLVTDEDSWYSKWHKMEQKFRIVYAQKGYLEE 220 230 240 250 260 270 310 320 330 340 350 360 bm0357 LVRLRESQLKDLEAENRRLQLQLEEAAAQNQREKRELEGVILELQEQLTGLIPSDHAPLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LVRLRESQLKDLEAENRRLQLQLEEAAAQNQREKRELEGVILELQEQLTGLIPSDHAPLA 280 290 300 310 320 330 370 380 390 400 410 420 bm0357 QGSKELTTPLVNQWPSLGTLNGAEGASNSKLYRRHSFMSTEPLSAEASLSSDSQRLGEGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 QGSKELTTPLVNQWPSLGTLNGAEGASNSKLYRRHSFMSTEPLSAEASLSSDSQRLGEGT 340 350 360 370 380 390 430 440 450 460 470 480 bm0357 RDEEPWGPIGKDPTPSMLGLCGSLASIPSCKSLASFKSNECLVSDSPEGSPALSPS ::::::::::. : :. gi|119 RDEEPWGPIGELPQPN 400 >>gi|3005755|gb|AAC09366.1| RaP2 interacting protein 8 [ (405 aa) initn: 2608 init1: 2608 opt: 2608 Z-score: 3005.0 bits: 565.2 E(): 9.7e-159 Smith-Waterman score: 2608; 100.000% identity (100.000% similar) in 400 aa overlap (36-435:1-400) 10 20 30 40 50 60 bm0357 RGPSRDPATGLGLREGWGGSGRRQQWPHIWMEASFVQTTMALGLSSKKASSRNVAVERKN :::::::::::::::::::::::::::::: gi|300 MEASFVQTTMALGLSSKKASSRNVAVERKN 10 20 30 70 80 90 100 110 120 bm0357 LITVCRFSVKTLLEKYTAEPIDDSSEEFVNFAAILEQILSHRFKACAPAGPVSWFSSDGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|300 LITVCRFSVKTLLEKYTAEPIDDSSEEFVNFAAILEQILSHRFKACAPAGPVSWFSSDGQ 40 50 60 70 80 90 130 140 150 160 170 180 bm0357 RGFWDYIRLACSKVPNNCVSSIENMENISTARAKGRAWIRVALMEKRMSEYITTALRDTR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|300 RGFWDYIRLACSKVPNNCVSSIENMENISTARAKGRAWIRVALMEKRMSEYITTALRDTR 100 110 120 130 140 150 190 200 210 220 230 240 bm0357 TTRRFYDSGAIMLRDEATILTGMLIGLSAIDFSFCLKGEVLDGKTPVVIDYTPYLKFTQS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|300 TTRRFYDSGAIMLRDEATILTGMLIGLSAIDFSFCLKGEVLDGKTPVVIDYTPYLKFTQS 160 170 180 190 200 210 250 260 270 280 290 300 bm0357 YDYLTDEEERHSAESSTSEDNSPEHPYLPLVTDEDSWYSKWHKMEQKFRIVYAQKGYLEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|300 YDYLTDEEERHSAESSTSEDNSPEHPYLPLVTDEDSWYSKWHKMEQKFRIVYAQKGYLEE 220 230 240 250 260 270 310 320 330 340 350 360 bm0357 LVRLRESQLKDLEAENRRLQLQLEEAAAQNQREKRELEGVILELQEQLTGLIPSDHAPLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|300 LVRLRESQLKDLEAENRRLQLQLEEAAAQNQREKRELEGVILELQEQLTGLIPSDHAPLA 280 290 300 310 320 330 370 380 390 400 410 420 bm0357 QGSKELTTPLVNQWPSLGTLNGAEGASNSKLYRRHSFMSTEPLSAEASLSSDSQRLGEGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|300 QGSKELTTPLVNQWPSLGTLNGAEGASNSKLYRRHSFMSTEPLSAEASLSSDSQRLGEGT 340 350 360 370 380 390 430 440 450 460 470 480 bm0357 RDEEPWGPIGKDPTPSMLGLCGSLASIPSCKSLASFKSNECLVSDSPEGSPALSPS :::::::::: gi|300 RDEEPWGPIGSSEPN 400 481 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Thu Aug 7 16:50:11 2008 done: Thu Aug 7 16:52:35 2008 Total Scan time: 867.280 Total Display time: 0.130 Function used was FASTA [version 34.26.5 April 26, 2007]