hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-16523626/chunk_1/iprscan-20080807-16523626.nocrc
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Query sequence: bm03574
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02759.9.ls RUN domain                                     179.4    8.4e-51   1
PF02759.9.fs RUN domain                                     177.6    9.6e-51   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02759.9.fs   1/1      95   224 ..     1   174 []   177.6  9.6e-51
PF02759.9.ls   1/1      95   224 ..     1   174 []   179.4  8.4e-51

Alignments of top-scoring domains:
PF02759.9.fs: domain 1 of 1, from 95 to 224: score 177.6, E = 9.6e-51
                   *->tLCpaleAllsHGLkrpelltgaihpwafiedaaagefekaalsvls
                      +++ +le++lsH++k++                    +++ ++s++s
     bm03574    95    NFAAILEQILSHRFKAC--------------------APAGPVSWFS 121  

                   sssllldsqrslgcdtnnldpsfkvlpvaeslkhivsqieqLaeKrSsvi
                   s++     qr++        +++++l + ++++++vs+ie++++     i
     bm03574   122 SDG-----QRGF--------WDYIRLACSKVPNNCVSSIENMEN-----I 153  

                   ktavgrgRKyAWiRlaLneksLssylklLlsdeellrkyYkpnAlLrdpS
                   +ta+ +gR  AWiR+aL+ek++s+y+++ l+d++++r++Y++ A++++  
     bm03574   154 STARAKGR--AWIRVALMEKRMSEYITTALRDTRTTRRFYDSGAIMLR-- 199  

                   deegCeillslLqgLsaldFsLdlkfe<-*
                    +e+ +il+++L gLsa+dFs++lk+e   
     bm03574   200 -DEA-TILTGMLIGLSAIDFSFCLKGE    224  

PF02759.9.ls: domain 1 of 1, from 95 to 224: score 179.4, E = 8.4e-51
                   *->tLCpaleAllsHGLkrpelltgaihpwafiedaaagefekaalsvls
                      +++ +le++lsH++k++                    +++ ++s++s
     bm03574    95    NFAAILEQILSHRFKAC--------------------APAGPVSWFS 121  

                   sssllldsqrslgcdtnnldpsfkvlpvaeslkhivsqieqLaeKrSsvi
                   s++     qr++        +++++l + ++++++vs+ie++++     i
     bm03574   122 SDG-----QRGF--------WDYIRLACSKVPNNCVSSIENMEN-----I 153  

                   ktavgrgRKyAWiRlaLneksLssylklLlsdeellrkyYkpnAlLrdpS
                   +ta+ +gR  AWiR+aL+ek++s+y+++ l+d++++r++Y++ A++++  
     bm03574   154 STARAKGR--AWIRVALMEKRMSEYITTALRDTRTTRRFYDSGAIMLR-- 199  

                   deegCeillslLqgLsaldFsLdlkfe<-*
                    +e+ +il+++L gLsa+dFs++lk+e   
     bm03574   200 -DEA-TILTGMLIGLSAIDFSFCLKGE    224  

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