hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090617/iprscan-20090617-23483959/chunk_1/iprscan-20090617-23483959.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: bm03620 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02826.9.ls D-isomer specific 2-hydroxyacid dehydrog 274.8 1.5e-79 1 PF02826.9.fs D-isomer specific 2-hydroxyacid dehydrog 272.8 6.1e-79 1 PF00389.20.fs D-isomer specific 2-hydroxyacid dehydrog 138.2 3e-39 1 PF00389.20.ls D-isomer specific 2-hydroxyacid dehydrog 140.1 5.7e-39 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00389.20.fs 1/1 22 330 .. 1 150 [] 138.2 3e-39 PF00389.20.ls 1/1 22 330 .. 1 150 [] 140.1 5.7e-39 PF02826.9.fs 1/1 124 298 .. 1 184 [] 272.8 6.1e-79 PF02826.9.ls 1/1 124 298 .. 1 184 [] 274.8 1.5e-79 Alignments of top-scoring domains: PF00389.20.fs: domain 1 of 1, from 22 to 330: score 138.2, E = 3e-39 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->vllldnyqnplrrpeelallkewakdnggvaevevtdldfellteel vl++d +l +p ++++l++ g ++v+ + l+ eel bm03620 22 VLISD----SL-DPCCRKILQD------GGLQVVEKQ---NLSKEEL 54 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx aealkdaadalvvrsntpvtaelLealgpnLKlIstrsaGyDniDldaak + +l+d +++l+vrs t+vta++++a+ +L +++++++G+Dn+Dl+aa+ bm03620 55 IAELQD-CEGLIVRSATKVTADVINAA-EKLQVVGRAGTGVDNVDLEAAT 102 RF xxxxxxxxxxxxxxxxxxxxx erGIvVtNvPgystesVAEla............................. ++GI+V+N+P+ ++ s AEl+ + +++ + + + ++++ ++++ bm03620 103 RKGILVMNTPNGNSLSAAELTcgmimclarqipqatasmkdgkwerkkfm 152 RF .................................................. + +++++ ++ +++++ +++ + + + + + ++ ++ + + bm03620 153 gtelngktlgilglgrigrevatrmqsfgmktigydpiispevsasfgvq 202 RF .................................................. +++++ ++ + + ++++ ++++++ + +++ + + ++++ bm03620 203 qlpleeiwplcdfitvhtpllpsttgllndntfaqckkgvrvvncarggi 252 RF xxxx ..............................................gaTe +++++++++ + ++++++ +++++++++ ++++ +++++ T+ bm03620 253 vdegallralqsgqcagaaldvfteepprdralvdhenviscphlgASTK 302 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxx EarermadialeNlvaflaGgppanvVn<-* Ea+ r +++++ ++v+ +G++++ vVn bm03620 303 EAQSRCGEEIAVQFVDMVKGKSLTGVVN 330 PF00389.20.ls: domain 1 of 1, from 22 to 330: score 140.1, E = 5.7e-39 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->vllldnyqnplrrpeelallkewakdnggvaevevtdldfellteel vl++d +l +p ++++l++ g ++v+ + l+ eel bm03620 22 VLISD----SL-DPCCRKILQD------GGLQVVEKQ---NLSKEEL 54 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx aealkdaadalvvrsntpvtaelLealgpnLKlIstrsaGyDniDldaak + +l+d +++l+vrs t+vta++++a+ +L +++++++G+Dn+Dl+aa+ bm03620 55 IAELQD-CEGLIVRSATKVTADVINAA-EKLQVVGRAGTGVDNVDLEAAT 102 RF xxxxxxxxxxxxxxxxxxxxx erGIvVtNvPgystesVAEla............................. ++GI+V+N+P+ ++ s AEl+ + +++ + + + ++++ ++++ bm03620 103 RKGILVMNTPNGNSLSAAELTcgmimclarqipqatasmkdgkwerkkfm 152 RF .................................................. + +++++ ++ +++++ +++ + + + + + ++ ++ + + bm03620 153 gtelngktlgilglgrigrevatrmqsfgmktigydpiispevsasfgvq 202 RF .................................................. +++++ ++ + + ++++ ++++++ + +++ + + ++++ bm03620 203 qlpleeiwplcdfitvhtpllpsttgllndntfaqckkgvrvvncarggi 252 RF xxxx ..............................................gaTe +++++++++ + ++++++ +++++++++ ++++ +++++ T+ bm03620 253 vdegallralqsgqcagaaldvfteepprdralvdhenviscphlgASTK 302 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxx EarermadialeNlvaflaGgppanvVn<-* Ea+ r +++++ ++v+ +G++++ vVn bm03620 303 EAQSRCGEEIAVQFVDMVKGKSLTGVVN 330 PF02826.9.fs: domain 1 of 1, from 124 to 298: score 272.8, E = 6.1e-79 *->laLlLalaRripeadrqvraGkWgawspaallgreLsGkTvGIiGlG ++++ laR+ip+a +++++GkW ++++++g+eL GkT+GI+GlG bm03620 124 CGMIMCLARQIPQATASMKDGKW---ERKKFMGTELNGKTLGILGLG 167 rIGravArrakaFGmkViaydrypkpeeeeaeelGvetryvsLdeLLaeS rIGr+vA r++ FGmk i+yd+ +pe+ + +Gv + +L+e+++ + bm03620 168 RIGREVATRMQSFGMKTIGYDPIISPEV--SASFGV--QQLPLEEIWPLC 213 DvvslhlPLTpeTrhlinaerlakMKpgAiLINtARGglVDEdALidALk D++++h+PL p+T +l+n+ ++a++K+g+ ++N+ARGg+VDE AL++AL+ bm03620 214 DFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQ 263 sGrIaGAgLDVfepEPlpadhpLllelpNVilTPHia<-* sG+ aGA+LDVf +EP+ + L +++NVi PH++ bm03620 264 SGQCAGAALDVFTEEPPRDR-AL-VDHENVISCPHLG 298 PF02826.9.ls: domain 1 of 1, from 124 to 298: score 274.8, E = 1.5e-79 *->laLlLalaRripeadrqvraGkWgawspaallgreLsGkTvGIiGlG ++++ laR+ip+a +++++GkW ++++++g+eL GkT+GI+GlG bm03620 124 CGMIMCLARQIPQATASMKDGKW---ERKKFMGTELNGKTLGILGLG 167 rIGravArrakaFGmkViaydrypkpeeeeaeelGvetryvsLdeLLaeS rIGr+vA r++ FGmk i+yd+ +pe+ + +Gv + +L+e+++ + bm03620 168 RIGREVATRMQSFGMKTIGYDPIISPEV--SASFGV--QQLPLEEIWPLC 213 DvvslhlPLTpeTrhlinaerlakMKpgAiLINtARGglVDEdALidALk D++++h+PL p+T +l+n+ ++a++K+g+ ++N+ARGg+VDE AL++AL+ bm03620 214 DFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQ 263 sGrIaGAgLDVfepEPlpadhpLllelpNVilTPHia<-* sG+ aGA+LDVf +EP+ + L +++NVi PH++ bm03620 264 SGQCAGAALDVFTEEPPRDR-AL-VDHENVISCPHLG 298 //