# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Obm03625.fasta.nr -Q bm03625.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 bm03625, 199 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6811604 sequences Expectation_n fit: rho(ln(x))= 5.0066+/-0.000194; mu= 7.9793+/- 0.011 mean_var=98.7962+/-18.417, 0's: 43 Z-trim: 100 B-trim: 0 in 0/66 Lambda= 0.129034 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|62089194|dbj|BAD93041.1| CS0DF038YO05 variant [ ( 326) 1293 250.6 1.6e-64 gi|90081130|dbj|BAE90045.1| unnamed protein produc ( 189) 1126 219.3 2.5e-55 gi|114653689|ref|XP_001144006.1| PREDICTED: simila ( 239) 939 184.6 8.8e-45 gi|3929378|sp|Q13243|SFRS5_HUMAN Splicing factor, ( 272) 939 184.6 9.6e-45 gi|30583835|gb|AAP36166.1| Homo sapiens splicing f ( 273) 939 184.6 9.6e-45 gi|119601409|gb|EAW81003.1| splicing factor, argin ( 271) 922 181.5 8.6e-44 gi|28193160|emb|CAD62322.1| unnamed protein produc ( 145) 902 177.4 7.6e-43 gi|73963393|ref|XP_867142.1| PREDICTED: similar to ( 253) 899 177.2 1.6e-42 gi|148878097|gb|AAI46186.1| SFRS5 protein [Bos tau ( 272) 899 177.2 1.7e-42 gi|73963397|ref|XP_853296.1| PREDICTED: similar to ( 280) 899 177.2 1.7e-42 gi|73963395|ref|XP_867150.1| PREDICTED: similar to ( 282) 899 177.2 1.7e-42 gi|194225140|ref|XP_001500514.2| PREDICTED: simila ( 272) 892 175.9 4.1e-42 gi|12841460|dbj|BAB25217.1| unnamed protein produc ( 270) 890 175.5 5.3e-42 gi|119601414|gb|EAW81008.1| splicing factor, argin ( 144) 885 174.3 6.8e-42 gi|148670739|gb|EDL02686.1| mCG7614, isoform CRA_b ( 151) 881 173.6 1.2e-41 gi|194225138|ref|XP_001500505.2| PREDICTED: simila ( 271) 875 172.7 3.7e-41 gi|1168968|sp|Q09167|SFRS5_RAT Splicing factor, ar ( 269) 873 172.4 4.8e-41 gi|194038489|ref|XP_001927469.1| PREDICTED: simila ( 271) 868 171.4 9.1e-41 gi|73963387|ref|XP_867115.1| PREDICTED: similar to ( 145) 862 170.0 1.3e-40 gi|82895195|ref|XP_891995.1| PREDICTED: similar to ( 269) 858 169.6 3.3e-40 gi|149429033|ref|XP_001517768.1| PREDICTED: simila ( 256) 841 166.4 2.9e-39 gi|149025036|gb|EDL81403.1| splicing factor, argin ( 142) 836 165.1 3.7e-39 gi|160333128|ref|NP_001026368.2| splicing factor, ( 264) 835 165.3 6.3e-39 gi|126282694|ref|XP_001370225.1| PREDICTED: simila ( 265) 835 165.3 6.4e-39 gi|3929369|sp|O35326|SFRS5_MOUSE Splicing factor, ( 270) 812 161.0 1.3e-37 gi|49522053|gb|AAH74518.1| Splicing factor, argini ( 272) 806 159.9 2.7e-37 gi|55824572|gb|AAV66406.1| splicing factor arginin ( 208) 686 137.4 1.2e-30 gi|49900455|gb|AAH75982.1| Zgc:92278 [Danio rerio] ( 285) 600 121.6 9.8e-26 gi|73963385|ref|XP_867104.1| PREDICTED: similar to ( 261) 580 117.8 1.2e-24 gi|156538036|ref|XP_001603791.1| PREDICTED: simila ( 337) 567 115.5 7.8e-24 gi|156538034|ref|XP_001603815.1| PREDICTED: simila ( 353) 567 115.5 8e-24 gi|110761019|ref|XP_391860.3| PREDICTED: similar t ( 342) 559 114.0 2.2e-23 gi|73992466|ref|XP_534422.2| PREDICTED: similar to ( 287) 555 113.2 3.3e-23 gi|126291113|ref|XP_001371339.1| PREDICTED: simila ( 340) 555 113.3 3.7e-23 gi|119601416|gb|EAW81010.1| splicing factor, argin ( 209) 550 112.1 5.1e-23 gi|72032169|ref|XP_798746.1| PREDICTED: similar to ( 311) 551 112.5 5.8e-23 gi|115371751|gb|ABI96200.1| SFRS6 [Sus scrofa] ( 345) 551 112.5 6.2e-23 gi|53133810|emb|CAG32234.1| hypothetical protein [ ( 348) 550 112.4 7.1e-23 gi|55239564|gb|EAA10559.3| AGAP004592-PA [Anophele ( 342) 545 111.4 1.3e-22 gi|122145041|sp|Q3B7L6|SFRS6_BOVIN Splicing factor ( 345) 545 111.4 1.3e-22 gi|194224429|ref|XP_001500385.2| PREDICTED: simila ( 256) 542 110.7 1.6e-22 gi|118101604|ref|XP_417747.2| PREDICTED: similar t ( 444) 544 111.4 1.8e-22 gi|56207616|emb|CAI20591.1| novel protein similar ( 242) 538 109.9 2.6e-22 gi|32822789|gb|AAH55238.1| Zgc:63770 [Danio rerio] ( 347) 538 110.1 3.3e-22 gi|91091338|ref|XP_966697.1| PREDICTED: similar to ( 282) 534 109.3 4.9e-22 gi|193716028|ref|XP_001949124.1| PREDICTED: simila ( 309) 534 109.3 5.2e-22 gi|47220462|emb|CAG03242.1| unnamed protein produc (1292) 540 111.2 6e-22 gi|157888755|emb|CAP09559.1| splicing factor, argi ( 355) 532 109.0 7.3e-22 gi|109092023|ref|XP_001084701.1| PREDICTED: simila ( 303) 531 108.8 7.5e-22 gi|1049086|gb|AAA93072.1| SRp55-3 ( 335) 531 108.8 8e-22 >>gi|62089194|dbj|BAD93041.1| CS0DF038YO05 variant [Homo (326 aa) initn: 1293 init1: 1293 opt: 1293 Z-score: 1313.7 bits: 250.6 E(): 1.6e-64 Smith-Waterman score: 1293; 100.000% identity (100.000% similar) in 199 aa overlap (1-199:128-326) 10 20 30 bm0362 ILIEYKCGKCHVCTLSNIFSFSSLVFFISC :::::::::::::::::::::::::::::: gi|620 RNDRRNAPPVRTENRLIVENLSSRVSWQVCILIEYKCGKCHVCTLSNIFSFSSLVFFISC 100 110 120 130 140 150 40 50 60 70 80 90 bm0362 DCLCVPFPLLCLTQLSCVKDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 DCLCVPFPLLCLTQLSCVKDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEK 160 170 180 190 200 210 100 110 120 130 140 150 bm0362 LSGKEINGRKIKLIEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 LSGKEINGRKIKLIEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRS 220 230 240 250 260 270 160 170 180 190 bm0362 RSKSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSRSVDSGN ::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 RSKSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSRSVDSGN 280 290 300 310 320 >>gi|90081130|dbj|BAE90045.1| unnamed protein product [M (189 aa) initn: 1126 init1: 1126 opt: 1126 Z-score: 1148.4 bits: 219.3 E(): 2.5e-55 Smith-Waterman score: 1126; 99.432% identity (99.432% similar) in 176 aa overlap (24-199:14-189) 10 20 30 40 50 60 bm0362 ILIEYKCGKCHVCTLSNIFSFSSLVFFISCDCLCVPFPLLCLTQLSCVKDLKDFMRQAGE : ::::::::::::::::::::::::::::::::::: gi|900 MFVLYLTSSLSVVLFFFISCDCLCVPFPLLCLTQLSCVKDLKDFMRQAGE 10 20 30 40 50 70 80 90 100 110 120 bm0362 VTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGSKRHSRSRSRSRSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|900 VTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGSKRHSRSRSRSRSR 60 70 80 90 100 110 130 140 150 160 170 180 bm0362 TRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQKRGSSSRSKSPAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|900 TRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQKRGSSSRSKSPAS 120 130 140 150 160 170 190 bm0362 VDRQRSRSRSRSRSVDSGN ::::::::::::::::::: gi|900 VDRQRSRSRSRSRSVDSGN 180 >>gi|114653689|ref|XP_001144006.1| PREDICTED: similar to (239 aa) initn: 939 init1: 939 opt: 939 Z-score: 959.1 bits: 184.6 E(): 8.8e-45 Smith-Waterman score: 939; 99.338% identity (100.000% similar) in 151 aa overlap (49-199:89-239) 20 30 40 50 60 70 bm0362 FSFSSLVFFISCDCLCVPFPLLCLTQLSCVKDLKDFMRQAGEVTFADAHRPKLNEGVVEF .::::::::::::::::::::::::::::: gi|114 GKELCSERNAPPVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEF 60 70 80 90 100 110 80 90 100 110 120 130 bm0362 ASYGDLKNAIEKLSGKEINGRKIKLIEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 ASYGDLKNAIEKLSGKEINGRKIKLIEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKS 120 130 140 150 160 170 140 150 160 170 180 190 bm0362 YSRSRSRSRSRSRSKSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSRSVDSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 YSRSRSRSRSRSRSKSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSRSVDSG 180 190 200 210 220 230 bm0362 N : gi|114 N >>gi|3929378|sp|Q13243|SFRS5_HUMAN Splicing factor, argi (272 aa) initn: 939 init1: 939 opt: 939 Z-score: 958.4 bits: 184.6 E(): 9.6e-45 Smith-Waterman score: 939; 99.338% identity (100.000% similar) in 151 aa overlap (49-199:122-272) 20 30 40 50 60 70 bm0362 FSFSSLVFFISCDCLCVPFPLLCLTQLSCVKDLKDFMRQAGEVTFADAHRPKLNEGVVEF .::::::::::::::::::::::::::::: gi|392 RRPRNDRRNAPPVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEF 100 110 120 130 140 150 80 90 100 110 120 130 bm0362 ASYGDLKNAIEKLSGKEINGRKIKLIEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|392 ASYGDLKNAIEKLSGKEINGRKIKLIEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKS 160 170 180 190 200 210 140 150 160 170 180 190 bm0362 YSRSRSRSRSRSRSKSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSRSVDSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|392 YSRSRSRSRSRSRSKSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSRSVDSG 220 230 240 250 260 270 bm0362 N : gi|392 N >>gi|30583835|gb|AAP36166.1| Homo sapiens splicing facto (273 aa) initn: 939 init1: 939 opt: 939 Z-score: 958.4 bits: 184.6 E(): 9.6e-45 Smith-Waterman score: 939; 99.338% identity (100.000% similar) in 151 aa overlap (49-199:122-272) 20 30 40 50 60 70 bm0362 FSFSSLVFFISCDCLCVPFPLLCLTQLSCVKDLKDFMRQAGEVTFADAHRPKLNEGVVEF .::::::::::::::::::::::::::::: gi|305 RRPRNDRRNAPPVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEF 100 110 120 130 140 150 80 90 100 110 120 130 bm0362 ASYGDLKNAIEKLSGKEINGRKIKLIEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 ASYGDLKNAIEKLSGKEINGRKIKLIEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKS 160 170 180 190 200 210 140 150 160 170 180 190 bm0362 YSRSRSRSRSRSRSKSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSRSVDSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 YSRSRSRSRSRSRSKSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSRSVDSG 220 230 240 250 260 270 bm0362 N : gi|305 NL >>gi|119601409|gb|EAW81003.1| splicing factor, arginine/ (271 aa) initn: 540 init1: 540 opt: 922 Z-score: 941.4 bits: 181.5 E(): 8.6e-44 Smith-Waterman score: 922; 98.675% identity (99.338% similar) in 151 aa overlap (49-199:122-271) 20 30 40 50 60 70 bm0362 FSFSSLVFFISCDCLCVPFPLLCLTQLSCVKDLKDFMRQAGEVTFADAHRPKLNEGVVEF .::::::::::::::::::::::::::::: gi|119 RRPRNDRRNAPPVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEF 100 110 120 130 140 150 80 90 100 110 120 130 bm0362 ASYGDLKNAIEKLSGKEINGRKIKLIEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKS :::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::: gi|119 ASYGDLKNAIEKLSGKEINGRKIKLIEGSKRH-RSRSRSRSRTRSSSRSRSRSRSRSRKS 160 170 180 190 200 210 140 150 160 170 180 190 bm0362 YSRSRSRSRSRSRSKSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSRSVDSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 YSRSRSRSRSRSRSKSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSRSVDSG 220 230 240 250 260 270 bm0362 N : gi|119 N >>gi|28193160|emb|CAD62322.1| unnamed protein product [H (145 aa) initn: 902 init1: 902 opt: 902 Z-score: 924.4 bits: 177.4 E(): 7.6e-43 Smith-Waterman score: 902; 100.000% identity (100.000% similar) in 145 aa overlap (55-199:1-145) 30 40 50 60 70 80 bm0362 VFFISCDCLCVPFPLLCLTQLSCVKDLKDFMRQAGEVTFADAHRPKLNEGVVEFASYGDL :::::::::::::::::::::::::::::: gi|281 MRQAGEVTFADAHRPKLNEGVVEFASYGDL 10 20 30 90 100 110 120 130 140 bm0362 KNAIEKLSGKEINGRKIKLIEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|281 KNAIEKLSGKEINGRKIKLIEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRS 40 50 60 70 80 90 150 160 170 180 190 bm0362 RSRSRSRSKSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSRSVDSGN ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|281 RSRSRSRSKSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSRSVDSGN 100 110 120 130 140 >>gi|73963393|ref|XP_867142.1| PREDICTED: similar to Spl (253 aa) initn: 767 init1: 767 opt: 899 Z-score: 918.6 bits: 177.2 E(): 1.6e-42 Smith-Waterman score: 899; 96.732% identity (97.386% similar) in 153 aa overlap (49-199:103-253) 20 30 40 50 60 70 bm0362 FSFSSLVFFISCDCLCVPFPLLCLTQLSCVKDLKDFMRQAGEVTFADAHRPKLNEGVVEF .::::::::::::::::::::::::::::: gi|739 RVLIFFLRNAPPVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEF 80 90 100 110 120 130 80 90 100 110 120 130 bm0362 ASYGDLKNAIEKLSGKEINGRKIKLIEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 ASYGDLKNAIEKLSGKEINGRKIKLIEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKS 140 150 160 170 180 190 140 150 160 170 180 190 bm0362 YSRSRSRSRSRSRSKSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSRS--VD ::::::::::: ::::::::::::::::::::::::::::::::::::::::::: :: gi|739 YSRSRSRSRSR--SKSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSRSRSVD 200 210 220 230 240 250 bm0362 SGN ::: gi|739 SGN >>gi|148878097|gb|AAI46186.1| SFRS5 protein [Bos taurus] (272 aa) initn: 767 init1: 767 opt: 899 Z-score: 918.2 bits: 177.2 E(): 1.7e-42 Smith-Waterman score: 899; 96.732% identity (97.386% similar) in 153 aa overlap (49-199:122-272) 20 30 40 50 60 70 bm0362 FSFSSLVFFISCDCLCVPFPLLCLTQLSCVKDLKDFMRQAGEVTFADAHRPKLNEGVVEF .::::::::::::::::::::::::::::: gi|148 RRPRNDRRNAPPVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEF 100 110 120 130 140 150 80 90 100 110 120 130 bm0362 ASYGDLKNAIEKLSGKEINGRKIKLIEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 ASYGDLKNAIEKLSGKEINGRKIKLIEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKS 160 170 180 190 200 210 140 150 160 170 180 190 bm0362 YSRSRSRSRSRSRSKSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSRS--VD ::::::::::: ::::::::::::::::::::::::::::::::::::::::::: :: gi|148 YSRSRSRSRSR--SKSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSRSRSVD 220 230 240 250 260 bm0362 SGN ::: gi|148 SGN 270 >>gi|73963397|ref|XP_853296.1| PREDICTED: similar to Spl (280 aa) initn: 767 init1: 767 opt: 899 Z-score: 918.1 bits: 177.2 E(): 1.7e-42 Smith-Waterman score: 899; 96.732% identity (97.386% similar) in 153 aa overlap (49-199:130-280) 20 30 40 50 60 70 bm0362 FSFSSLVFFISCDCLCVPFPLLCLTQLSCVKDLKDFMRQAGEVTFADAHRPKLNEGVVEF .::::::::::::::::::::::::::::: gi|739 YVMDAINRNAPPVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNEGVVEF 100 110 120 130 140 150 80 90 100 110 120 130 bm0362 ASYGDLKNAIEKLSGKEINGRKIKLIEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 ASYGDLKNAIEKLSGKEINGRKIKLIEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKS 160 170 180 190 200 210 140 150 160 170 180 190 bm0362 YSRSRSRSRSRSRSKSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSRS--VD ::::::::::: ::::::::::::::::::::::::::::::::::::::::::: :: gi|739 YSRSRSRSRSR--SKSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSRSRSVD 220 230 240 250 260 270 bm0362 SGN ::: gi|739 SGN 280 199 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Thu Aug 7 17:01:48 2008 done: Thu Aug 7 17:04:42 2008 Total Scan time: 626.320 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]