hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-17044380/chunk_1/iprscan-20080807-17044380.nocrc
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Query sequence: bm03625
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00076.12.fs RNA recognition motif. (a.k.a. RRM, RBD, or     28.7    2.7e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00076.12.fs   1/1      49   103 ..    13    74 .]    28.7  2.7e-07

Alignments of top-scoring domains:
PF00076.12.fs: domain 1 of 1, from 49 to 103: score 28.7, E = 2.7e-07
                   *->edLkdlFskfGpiesikivrDttretgrskGfaFVeFedeedAekAl
                      +dLkd+ ++ G++     + D   ++    + + VeF+++ d + A+
     bm03625    49    KDLKDFMRQAGEV----TFAD---AHRPKLNEGVVEFASYGDLKNAI 88   

                   dalnGkelggrelrv<-*
                   ++l Gke++gr+++    
     bm03625    89 EKLSGKEINGRKIKL    103  

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