hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-17221143/chunk_1/iprscan-20080807-17221143.nocrc
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Query sequence: bm03735
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00789.11.fs UBX domain                                      34.7    3.8e-09   2
PF00789.11.ls UBX domain                                      33.2    8.6e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00789.11.fs   2/2     375   454 ..     1    92 []    31.3  3.4e-08
PF00789.11.ls   1/1     375   454 ..     1    92 []    33.2  8.6e-07

Alignments of top-scoring domains:
PF00789.11.fs: domain 2 of 2, from 375 to 454: score 31.3, E = 3.4e-08
                   *->skaedvcrlqiRlPDGsrlvrrFnssdklqdvydfVdsnrddadepe
                       ++++++ l++ +PD++ l+  F++s+++ d++dfV+s++   + + 
     bm03735   375    LERYPKVALRVLFPDRYVLQGFFRPSETVGDLRDFVRSHLGNPELS- 420  

                   VyPdYHdyeFsLltnfPRrlltdddesktLkeagllpnstlvlep<-*
                            F L  + P+ +l+d    +tL +a+l+p + + l     
     bm03735   421 ---------FYLFITPPKTVLDDHT--QTLFQANLFPAALVHLGA    454  

PF00789.11.ls: domain 1 of 1, from 375 to 454: score 33.2, E = 8.6e-07
                   *->skaedvcrlqiRlPDGsrlvrrFnssdklqdvydfVdsnrddadepe
                       ++++++ l++ +PD++ l+  F++s+++ d++dfV+s++   + + 
     bm03735   375    LERYPKVALRVLFPDRYVLQGFFRPSETVGDLRDFVRSHLGNPELS- 420  

                   VyPdYHdyeFsLltnfPRrlltdddesktLkeagllpnstlvlep<-*
                            F L  + P+ +l+d    +tL +a+l+p + + l     
     bm03735   421 ---------FYLFITPPKTVLDDHT--QTLFQANLFPAALVHLGA    454  

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