hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-17275613/chunk_1/iprscan-20080807-17275613.nocrc
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Query sequence: bm03741
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00646.23.fs F-box domain                                    29.5    8.2e-07   1
PF00646.23.ls F-box domain                                    31.5    2.8e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00646.23.fs   1/1     365   412 ..     1    46 []    29.5  8.2e-07
PF00646.23.ls   1/1     365   412 ..     1    46 []    31.5  2.8e-06

Alignments of top-scoring domains:
PF00646.23.fs: domain 1 of 1, from 365 to 412: score 29.5, E = 8.2e-07
                   *->fslldLPdellleIlsrLdpkdllrlslVSkrwrslvdsl.lwk.kl
                      f l  LP+el l+I++ Ld +++l+ls V++ + ++ +++ lw+  +
     bm03741   365    FGLVVLPLELKLRIFRLLDVRSVLSLSAVCRDLFTASNDPlLWRfLY 411  

                   l<-*
                   l   
     bm03741   412 L    412  

PF00646.23.ls: domain 1 of 1, from 365 to 412: score 31.5, E = 2.8e-06
                   *->fslldLPdellleIlsrLdpkdllrlslVSkrwrslvdsl.lwk.kl
                      f l  LP+el l+I++ Ld +++l+ls V++ + ++ +++ lw+  +
     bm03741   365    FGLVVLPLELKLRIFRLLDVRSVLSLSAVCRDLFTASNDPlLWRfLY 411  

                   l<-*
                   l   
     bm03741   412 L    412  

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