hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080807/iprscan-20080807-17334460/chunk_1/iprscan-20080807-17334460.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: bm03760 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 473.7 2.1e-139 15 PF00096.16.fs Zinc finger, C2H2 type 444.2 1.6e-130 15 PF01352.17.fs KRAB box 98.8 1.9e-27 1 PF01352.17.ls KRAB box 100.8 3.8e-27 1 PF01096.9.fs Transcription factor S-II (TFIIS) 38.5 3.3e-11 12 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01352.17.fs 1/1 23 63 .. 1 41 [] 98.8 1.9e-27 PF01352.17.ls 1/1 23 63 .. 1 41 [] 100.8 3.8e-27 PF00096.16.ls 1/15 235 257 .. 1 24 [] 24.4 0.00036 PF00096.16.fs 2/15 263 285 .. 1 24 [] 27.1 1.7e-05 PF00096.16.ls 2/15 263 285 .. 1 24 [] 29.1 1.5e-05 PF00096.16.fs 3/15 291 313 .. 1 24 [] 28.6 7.1e-06 PF00096.16.ls 3/15 291 313 .. 1 24 [] 30.6 5.3e-06 PF00096.16.fs 4/15 319 341 .. 1 24 [] 36.4 7.9e-08 PF00096.16.ls 4/15 319 341 .. 1 24 [] 38.4 2.3e-08 PF00096.16.fs 5/15 347 369 .. 1 24 [] 33.1 5.2e-07 PF00096.16.ls 5/15 347 369 .. 1 24 [] 35.1 2.2e-07 PF00096.16.fs 6/15 375 397 .. 1 24 [] 31.5 1.3e-06 PF00096.16.ls 6/15 375 397 .. 1 24 [] 33.5 6.9e-07 PF00096.16.ls 7/15 403 425 .. 1 24 [] 34.0 4.9e-07 PF00096.16.fs 7/15 403 425 .. 1 24 [] 32.0 1e-06 PF00096.16.ls 8/15 431 453 .. 1 24 [] 33.7 6e-07 PF00096.16.fs 8/15 431 453 .. 1 24 [] 31.7 1.2e-06 PF00096.16.ls 9/15 459 481 .. 1 24 [] 34.0 4.9e-07 PF00096.16.fs 9/15 459 481 .. 1 24 [] 32.0 1e-06 PF00096.16.ls 10/15 487 509 .. 1 24 [] 38.4 2.3e-08 PF00096.16.fs 10/15 487 509 .. 1 24 [] 36.4 8e-08 PF00096.16.ls 11/15 515 537 .. 1 24 [] 34.5 3.4e-07 PF00096.16.fs 11/15 515 537 .. 1 24 [] 32.6 7.3e-07 PF00096.16.ls 12/15 543 565 .. 1 24 [] 32.1 1.8e-06 PF00096.16.fs 12/15 543 565 .. 1 24 [] 30.2 2.9e-06 PF00096.16.ls 13/15 571 593 .. 1 24 [] 25.4 0.00019 PF00096.16.fs 13/15 571 593 .. 1 24 [] 23.4 0.00014 PF00096.16.ls 14/15 599 621 .. 1 24 [] 23.6 0.00065 PF00096.16.fs 15/15 627 652 .. 1 24 [] 25.0 5.6e-05 PF00096.16.ls 15/15 627 652 .. 1 24 [] 27.0 6.4e-05 Alignments of top-scoring domains: PF01352.17.fs: domain 1 of 1, from 23 to 63: score 98.8, E = 1.9e-27 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* ++F+DVaVdFtq+EW+lL+paQr+LYr+VMlENysnLvSlg bm03760 23 MAFRDVAVDFTQDEWRLLSPAQRTLYREVMLENYSNLVSLG 63 PF01352.17.ls: domain 1 of 1, from 23 to 63: score 100.8, E = 3.8e-27 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* ++F+DVaVdFtq+EW+lL+paQr+LYr+VMlENysnLvSlg bm03760 23 MAFRDVAVDFTQDEWRLLSPAQRTLYREVMLENYSNLVSLG 63 PF00096.16.ls: domain 1 of 15, from 235 to 257: score 24.4, E = 0.00036 *->ykCpfdCgksFsrksnLkrHlrtH<-* C +Cg sFs nL +H+r+H bm03760 235 VNCG-ECGLSFSKMTNLLSHQRIH 257 PF00096.16.fs: domain 2 of 15, from 263 to 285: score 27.1, E = 1.7e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +C k Fs k++L rH++ H bm03760 263 YVCG-VCEKGFSLKKSLARHQKAH 285 PF00096.16.ls: domain 2 of 15, from 263 to 285: score 29.1, E = 1.5e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +C k Fs k++L rH++ H bm03760 263 YVCG-VCEKGFSLKKSLARHQKAH 285 PF00096.16.fs: domain 3 of 15, from 291 to 313: score 28.6, E = 7.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +C +Cg+ F+rks+L H rtH bm03760 291 IVCR-ECGRGFNRKSTLIIHERTH 313 PF00096.16.ls: domain 3 of 15, from 291 to 313: score 30.6, E = 5.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +C +Cg+ F+rks+L H rtH bm03760 291 IVCR-ECGRGFNRKSTLIIHERTH 313 PF00096.16.fs: domain 4 of 15, from 319 to 341: score 36.4, E = 7.9e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg+ Fs+ksnL H+rtH bm03760 319 YMCS-ECGRGFSQKSNLIIHQRTH 341 PF00096.16.ls: domain 4 of 15, from 319 to 341: score 38.4, E = 2.3e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg+ Fs+ksnL H+rtH bm03760 319 YMCS-ECGRGFSQKSNLIIHQRTH 341 PF00096.16.fs: domain 5 of 15, from 347 to 369: score 33.1, E = 5.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cgk Fs+ks rH+rtH bm03760 347 YVCR-ECGKGFSQKSAVVRHQRTH 369 PF00096.16.ls: domain 5 of 15, from 347 to 369: score 35.1, E = 2.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cgk Fs+ks rH+rtH bm03760 347 YVCR-ECGKGFSQKSAVVRHQRTH 369 PF00096.16.fs: domain 6 of 15, from 375 to 397: score 31.5, E = 1.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +C+ dCg Fs++snL +H+rtH bm03760 375 IVCS-DCGLGFSDRSNLISHQRTH 397 PF00096.16.ls: domain 6 of 15, from 375 to 397: score 33.5, E = 6.9e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* +C+ dCg Fs++snL +H+rtH bm03760 375 IVCS-DCGLGFSDRSNLISHQRTH 397 PF00096.16.ls: domain 7 of 15, from 403 to 425: score 34.0, E = 4.9e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cg++F+++ +L +H+rtH bm03760 403 YACK-ECGRCFRQRTTLVNHQRTH 425 PF00096.16.fs: domain 7 of 15, from 403 to 425: score 32.0, E = 1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cg++F+++ +L +H+rtH bm03760 403 YACK-ECGRCFRQRTTLVNHQRTH 425 PF00096.16.ls: domain 8 of 15, from 431 to 453: score 33.7, E = 6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cg sFs++s+L +H+rtH bm03760 431 YVCG-VCGHSFSQNSTLISHRRTH 453 PF00096.16.fs: domain 8 of 15, from 431 to 453: score 31.7, E = 1.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cg sFs++s+L +H+rtH bm03760 431 YVCG-VCGHSFSQNSTLISHRRTH 453 PF00096.16.ls: domain 9 of 15, from 459 to 481: score 34.0, E = 4.9e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cg+ Fs ks+L+rH+++H bm03760 459 YVCG-VCGRGFSLKSHLNRHQNIH 481 PF00096.16.fs: domain 9 of 15, from 459 to 481: score 32.0, E = 1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cg+ Fs ks+L+rH+++H bm03760 459 YVCG-VCGRGFSLKSHLNRHQNIH 481 PF00096.16.ls: domain 10 of 15, from 487 to 509: score 38.4, E = 2.3e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* +C+ dCg+ Fs++snL rH+rtH bm03760 487 IVCK-DCGRGFSQQSNLIRHQRTH 509 PF00096.16.fs: domain 10 of 15, from 487 to 509: score 36.4, E = 8e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* +C+ dCg+ Fs++snL rH+rtH bm03760 487 IVCK-DCGRGFSQQSNLIRHQRTH 509 PF00096.16.ls: domain 11 of 15, from 515 to 537: score 34.5, E = 3.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* +C +Cg+ Fs+ksnL +H+rtH bm03760 515 MVCG-ECGRGFSQKSNLVAHQRTH 537 PF00096.16.fs: domain 11 of 15, from 515 to 537: score 32.6, E = 7.3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* +C +Cg+ Fs+ksnL +H+rtH bm03760 515 MVCG-ECGRGFSQKSNLVAHQRTH 537 PF00096.16.ls: domain 12 of 15, from 543 to 565: score 32.1, E = 1.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cg+ Fs+++ L rH+r+H bm03760 543 YVCR-ECGRGFSHQAGLIRHKRKH 565 PF00096.16.fs: domain 12 of 15, from 543 to 565: score 30.2, E = 2.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cg+ Fs+++ L rH+r+H bm03760 543 YVCR-ECGRGFSHQAGLIRHKRKH 565 PF00096.16.ls: domain 13 of 15, from 571 to 593: score 25.4, E = 0.00019 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cg F +ks L +H+r H bm03760 571 YMCR-QCGLGFGNKSALITHKRAH 593 PF00096.16.fs: domain 13 of 15, from 571 to 593: score 23.4, E = 0.00014 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +Cg F +ks L +H+r H bm03760 571 YMCR-QCGLGFGNKSALITHKRAH 593 PF00096.16.ls: domain 14 of 15, from 599 to 621: score 23.6, E = 0.00065 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C +Cg+ F +ks+L+ H++tH bm03760 599 CVCR-ECGQGFLQKSHLTLHQMTH 621 PF00096.16.fs: domain 15 of 15, from 627 to 652: score 25.0, E = 5.6e-05 *->ykCpfdCgksFsrksnLkrHlrt...H<-* y+C+ Cg+ Fs ks+L rH++t++ H bm03760 627 YVCK-TCGRGFSLKSHLSRHRKTtsvH 652 PF00096.16.ls: domain 15 of 15, from 627 to 652: score 27.0, E = 6.4e-05 *->ykCpfdCgksFsrksnLkrHlrt...H<-* y+C+ Cg+ Fs ks+L rH++t++ H bm03760 627 YVCK-TCGRGFSLKSHLSRHRKTtsvH 652 //