hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080807/iprscan-20080807-17444250/chunk_1/iprscan-20080807-17444250.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: bm03803 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00183.9.fs Hsp90 protein 150.9 3.1e-42 4 PF00183.9.ls Hsp90 protein 27.8 1e-16 1 PF02518.16.fs Histidine kinase-, DNA gyrase B-, and HSP90 45.5 1.6e-12 1 PF02518.16.ls Histidine kinase-, DNA gyrase B-, and HSP90 47.4 4.5e-11 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02518.16.fs 1/1 107 259 .. 1 127 [] 45.5 1.6e-12 PF02518.16.ls 1/1 107 259 .. 1 127 [] 47.4 4.5e-11 PF00183.9.fs 1/4 262 286 .. 1 25 [. 12.9 0.0019 PF00183.9.ls 1/1 262 703 .] 1 550 [] 27.8 1e-16 PF00183.9.fs 2/4 291 405 .. 95 213 .. 56.1 5.1e-15 PF00183.9.fs 3/4 463 610 .. 274 416 .. 77.0 1.3e-20 PF00183.9.fs 4/4 640 655 .. 449 464 .. 4.9 0.26 Alignments of top-scoring domains: PF02518.16.fs: domain 1 of 1, from 107 to 259: score 45.5, E = 1.6e-12 *->gdedrLrqvlsNLldNAikhapag.......geitvrlerdgdrlri + e+++r+++sN+ d k ++ ++++ +e +++l + + +i bm03803 107 EKEVFIRELISNASDALEKLRHKLvsdgqalPEMEIHLQTNAEKGTI 153 tVeDnGpGIppe.hk...isa.edleriFepFyrtdgpsaesladsr.rk t++D+G+G++ e+++++ +++ ++ F + + +++ bm03803 154 TIQDTGIGMTQEeLVsnlGTIaRSGSKAFLDALQNQA-------EASsKI 196 igGGLtGLGLaivkelvelhgGtitvesep.................... ig+ +G+G++ + ++++++++ s+ +++ + + +++++ + bm03803 197 IGQ--FGVGFYSAFMVADRVEVY----SRSaapgslgyqwlsdgsgvfei 240 ......ggGttftltlPla<-* + ++ Gt+++++l+ + bm03803 241 aeasgvRTGTKIIIHLKSD 259 PF02518.16.ls: domain 1 of 1, from 107 to 259: score 47.4, E = 4.5e-11 *->gdedrLrqvlsNLldNAikhapag.......geitvrlerdgdrlri + e+++r+++sN+ d k ++ ++++ +e +++l + + +i bm03803 107 EKEVFIRELISNASDALEKLRHKLvsdgqalPEMEIHLQTNAEKGTI 153 tVeDnGpGIppe.hk...isa.edleriFepFyrtdgpsaesladsr.rk t++D+G+G++ e+++++ +++ ++ F + + +++ bm03803 154 TIQDTGIGMTQEeLVsnlGTIaRSGSKAFLDALQNQA-------EASsKI 196 igGGLtGLGLaivkelvelhgGtitvesep.................... ig+ +G+G++ + ++++++++ s+ +++ + + +++++ + bm03803 197 IGQ--FGVGFYSAFMVADRVEVY----SRSaapgslgyqwlsdgsgvfei 240 ......ggGttftltlPla<-* + ++ Gt+++++l+ + bm03803 241 aeasgvRTGTKIIIHLKSD 259 PF00183.9.fs: domain 1 of 4, from 262 to 286: score 12.9, E = 0.0019 *->EYLEerrlKelVKKhSEFInYPIyL<-* E e r ++V K+S F+++P yL bm03803 262 EFSSEARVRDVVTKYSNFVSFPLYL 286 PF00183.9.ls: domain 1 of 1, from 262 to 703: score 27.8, E = 1e-16 *->EYLEerrlKelVKKhSEFInYPIyLwveKevekEVpdeEeEeekeek E e r ++V K+S F+++P yL + bm03803 262 EFSSEARVRDVVTKYSNFVSFPLYLNGRR------------------ 290 eeeeektedpkidDkepkeEEedeeeekeEKKkKtKKVkEtttEwElLNk +N bm03803 291 -----------------------------------------------MNT 293 tKPIWtRnPkdvTkEEYaaFYKSLtnDweDekpLAvkHFSVEGqLEFkAi +IW+ +Pkdv + +FY+ + + p ++ H L ++i bm03803 294 LQAIWMMDPKDVREWQHEEFYRYVAQAHDK--PRYTLHYKTDAPLNIRSI 341 LFVPkrAPfDLFEskynkkknNIKLYVRRVFImDdcedLiPeyLsFvKGV +VP P +F+ + + LY R V I ++d +P++L F++GV bm03803 342 FYVPDMKPS-MFDVS-RELGSSVALYSRKVLIQTKATDILPKWLRFIRGV 389 VDSEDLPLNiSREmLQQnKiLKVIRKnLVkKcLelfneiAeedPdeEdKe VDSE PLN+SRE LQ + + R L + + f d e bm03803 390 VDSEEIPLNLSRELLQESALIRKLRDVLQQRLIKFFIDQS-----KKDAE 434 nYkkFYeeFsKNiKLGihEDaaNRak..LAkLLRFeStkSg.deltSLkd Y+kF+e + Gi + k+++AkLLR+eS++ +++ ltSL + bm03803 435 KYAKFFEDYGLFMREGIVTATEQEVKedIAKLLRYESSALPsGQLTSLSE 484 YVtRMKegQkdIYYITGeSKkqvekSPFlErLkkKgyEVlymtdPiDEYa Y +RM +g +IYY+ + +e SP E++kkK+ EVl+ + DE bm03803 485 YASRMRAGTRNIYYLCAPNRHLAEHSPYYEAMKKKDTEVLFCFEQFDELT 534 iqqLkEFEGKkLvnvTKEGLeLeEsEeeKkkrEe......lkkefEeLck +L+EF+ KkL +v + + + eeK ++ + + +ke EeL bm03803 535 LLHLREFDKKKLISVETD-IVVDHYKEEKFEDRSpaaeclSEKETEELMA 583 wmKeaiLgdkVEKVvVSnRLvdSPCalvTSqYGWSANMERIMKAQALrDs wm + +Lg V V+V RL + P+ ++ + G + R+ Q L + bm03803 584 WMRN-VLGSRVTNVKVTLRLDTHPAMVTVLEMGAARHFLRM---QQLAKT 629 SmsaYmssKKtlEINPrhPIIkeLrkrveaDknDktVKDLvvLL....ye + tlEINPrh +Ik L + + + L++LL ++ ye bm03803 630 QEERAQLLQPTLEINPRHALIKKLNQLRASEPG------LAQLLvdqiYE 673 TALLtSGFsLedPkafAsRIyRmiklGLsIDeDeeveeedeveeaeveet A G +dP a R + ++ + L e bm03803 674 NAMIAAG-LVDDPRAMVGRLNELLVKAL-----ERH-------------- 703 epaeedaedskmEevD<-* bm03803 - ---------------- - PF00183.9.fs: domain 2 of 4, from 291 to 405: score 56.1, E = 5.1e-15 *->LNktKPIWtRnPkdvTkEEYaaFYKSLtnDweDekpLAvkHFSVEGq +N +IW+ +Pkdv + +FY+ + + p ++ H bm03803 291 MNTLQAIWMMDPKDVREWQHEEFYRYVAQAHDK--PRYTLHYKTDAP 335 LEFkAiLFVPkrAPfDLFEskynkkknNIKLYVRRVFImDdcedLiPeyL L ++i +VP P +F+ + + LY R V I ++d +P++L bm03803 336 LNIRSIFYVPDMKPS-MFDVS-RELGSSVALYSRKVLIQTKATDILPKWL 383 sFvKGVVDSEDLPLNiSREmLQ<-* F++GVVDSE PLN+SRE LQ bm03803 384 RFIRGVVDSEEIPLNLSRELLQ 405 PF00183.9.fs: domain 3 of 4, from 463 to 610: score 77.0, E = 1.3e-20 *->LAkLLRFeStkSg.deltSLkdYVtRMKegQkdIYYITGeSKkqvek +AkLLR+eS++ +++ ltSL +Y +RM +g +IYY+ + +e bm03803 463 IAKLLRYESSALPsGQLTSLSEYASRMRAGTRNIYYLCAPNRHLAEH 509 SPFlErLkkKgyEVlymtdPiDEYaiqqLkEFEGKkLvnvTKEGLeLeEs SP E++kkK+ EVl+ + DE +L+EF+ KkL +v + + + bm03803 510 SPYYEAMKKKDTEVLFCFEQFDELTLLHLREFDKKKLISVETD-IVVDHY 558 EeeKkkrEe......lkkefEeLckwmKeaiLgdkVEKVvVSnRLvdSPC eeK ++ + + +ke EeL wm + +Lg V V+V RL + P+ bm03803 559 KEEKFEDRSpaaeclSEKETEELMAWMRN-VLGSRVTNVKVTLRLDTHPA 607 alv<-* ++ bm03803 608 MVT 610 PF00183.9.fs: domain 4 of 4, from 640 to 655: score 4.9, E = 0.26 *->tlEINPrhPIIkeLrk<-* tlEINPrh +Ik L + bm03803 640 TLEINPRHALIKKLNQ 655 //