# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Obm03840.fasta.nr -Q bm03840.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 bm03840, 566 aa vs /cdna2/lib/nr/nr library 3071326396 residues in 8985982 sequences statistics sampled from 60000 to 8980753 sequences Expectation_n fit: rho(ln(x))= 6.1590+/-0.000197; mu= 8.1465+/- 0.011 mean_var=110.6632+/-21.202, 0's: 35 Z-trim: 48 B-trim: 16 in 1/65 Lambda= 0.121919 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(8985982) gi|168277924|dbj|BAG10940.1| RNA polymerase II sub ( 534) 3529 631.5 2.1e-178 gi|114676543|ref|XP_001148355.1| PREDICTED: RPB5-m ( 568) 3517 629.4 9.6e-178 gi|182676402|sp|O94763.2|RMP_HUMAN RecName: Full=U ( 534) 3515 629.1 1.2e-177 gi|19924159|ref|NP_003787.2| RPB5-mediating protei ( 535) 3512 628.5 1.7e-177 gi|158257772|dbj|BAF84859.1| unnamed protein produ ( 534) 3509 628.0 2.4e-177 gi|109124178|ref|XP_001085349.1| PREDICTED: simila ( 537) 3348 599.7 8.2e-169 gi|109124180|ref|XP_001085459.1| PREDICTED: simila ( 547) 3273 586.5 7.7e-165 gi|45501337|gb|AAH67259.1| Chromosome 19 open read ( 494) 3172 568.7 1.6e-159 gi|19924161|ref|NP_604431.1| RPB5-mediating protei ( 495) 3160 566.6 6.9e-159 gi|3970833|dbj|BAA34781.1| RPB5 meidating protein ( 508) 3160 566.6 7e-159 gi|4165095|gb|AAD08679.1| NNX3 [Homo sapiens] ( 458) 3011 540.4 5e-151 gi|152941252|gb|ABS45063.1| RPB5-mediating protein ( 524) 2926 525.5 1.8e-146 gi|122139234|sp|Q3B7M7.1|RMP_BOVIN RecName: Full=U ( 524) 2922 524.8 2.9e-146 gi|34191784|gb|AAH26184.2| C19orf2 protein [Homo s ( 490) 2876 516.6 7.5e-144 gi|73948564|ref|XP_533709.2| PREDICTED: similar to ( 561) 2850 512.1 2e-142 gi|194215255|ref|XP_001488931.2| PREDICTED: simila ( 493) 2734 491.7 2.5e-136 gi|182676598|sp|Q3TLD5.2|RMP_MOUSE RecName: Full=U ( 531) 2529 455.6 1.9e-125 gi|74151497|dbj|BAE38857.1| unnamed protein produc ( 531) 2524 454.8 3.4e-125 gi|149056162|gb|EDM07593.1| similar to NNX3 (predi ( 530) 2497 450.0 9.3e-124 gi|109124182|ref|XP_001085119.1| PREDICTED: simila ( 419) 2493 449.2 1.3e-123 gi|109124184|ref|XP_001085232.1| PREDICTED: simila ( 412) 2492 449.0 1.4e-123 gi|34782999|gb|AAH14933.2| C19orf2 protein [Homo s ( 376) 2438 439.5 9.5e-121 gi|90082651|dbj|BAE90507.1| unnamed protein produc ( 387) 2380 429.3 1.1e-117 gi|18606452|gb|AAH23029.1| C80913 protein [Mus mus ( 457) 2178 393.8 6.4e-107 gi|74223587|dbj|BAE21626.1| unnamed protein produc ( 457) 2173 393.0 1.2e-106 gi|4165097|gb|AAD08680.1| NNX3 [Mus musculus] ( 457) 2167 391.9 2.5e-106 gi|56541795|emb|CAI30279.1| hypothetical protein [ ( 266) 1576 287.8 3.2e-75 gi|126296106|ref|XP_001368804.1| PREDICTED: hypoth ( 510) 1410 258.8 3.2e-66 gi|149639929|ref|XP_001507692.1| PREDICTED: hypoth ( 482) 1322 243.3 1.4e-61 gi|74228121|dbj|BAE38015.1| unnamed protein produc ( 292) 1207 222.9 1.2e-55 gi|118096368|ref|XP_414123.2| PREDICTED: hypotheti ( 481) 1098 203.9 1e-49 gi|224064748|ref|XP_002195217.1| PREDICTED: simila ( 512) 1029 191.8 4.8e-46 gi|157423643|gb|AAI53718.1| C19orf2 protein [Xenop ( 327) 1023 190.6 7.2e-46 gi|74221270|dbj|BAE42121.1| unnamed protein produc ( 177) 1016 189.1 1.1e-45 gi|49118561|gb|AAH73569.1| LOC443668 protein [Xeno ( 355) 987 184.3 6.1e-44 gi|50415136|gb|AAH77366.1| MGC81469 protein [Xenop ( 490) 987 184.4 7.8e-44 gi|66910978|gb|AAH97757.1| LOC443668 protein [Xeno ( 345) 978 182.7 1.8e-43 gi|66911665|gb|AAH96800.1| Zgc:110109 [Danio rerio ( 508) 833 157.3 1.1e-35 gi|148725883|emb|CAN87857.1| novel protein (zgc:11 ( 512) 827 156.2 2.4e-35 gi|224144180|ref|XP_002188551.1| PREDICTED: simila ( 232) 796 150.5 5.8e-34 gi|187469382|gb|AAI66945.1| C19orf2 protein [Xenop ( 270) 783 148.3 3.2e-33 gi|47225796|emb|CAF98276.1| unnamed protein produc ( 517) 782 148.3 5.8e-33 gi|114698308|ref|XP_524200.2| PREDICTED: similar t ( 114) 725 137.8 2e-30 gi|156212879|gb|EDO33919.1| predicted protein [Nem ( 185) 467 92.6 1.3e-16 gi|190586008|gb|EDV26076.1| hypothetical protein T ( 341) 461 91.7 4.2e-16 gi|74852204|sp|Q54HG4.1|RMP_DICDI RecName: Full=RN ( 500) 415 83.8 1.5e-13 gi|215507391|gb|EEC16883.1| conserved hypothetical ( 336) 389 79.1 2.7e-12 gi|118105398|ref|XP_424087.2| PREDICTED: hypotheti ( 114) 378 76.7 4.6e-12 gi|198416616|ref|XP_002128707.1| PREDICTED: simila ( 325) 361 74.1 8.1e-11 gi|221112296|ref|XP_002155622.1| PREDICTED: simila (1175) 359 74.2 2.7e-10 >>gi|168277924|dbj|BAG10940.1| RNA polymerase II subunit (534 aa) initn: 3529 init1: 3529 opt: 3529 Z-score: 3360.2 bits: 631.5 E(): 2.1e-178 Smith-Waterman score: 3529; 100.000% identity (100.000% similar) in 534 aa overlap (33-566:1-534) 10 20 30 40 50 60 bm0384 ARGRWATAGRAACAGAGSGLTRRAEARGPVMEAPTVETPPDPSPPSAPAPVLVPLRAPDV :::::::::::::::::::::::::::::: gi|168 MEAPTVETPPDPSPPSAPAPVLVPLRAPDV 10 20 30 70 80 90 100 110 120 bm0384 ARLREEQEKVVTNCQERIQHWKKVDNDYNALRERLSTLPDKLSYNIMVPFGPFAFMPGKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 ARLREEQEKVVTNCQERIQHWKKVDNDYNALRERLSTLPDKLSYNIMVPFGPFAFMPGKL 40 50 60 70 80 90 130 140 150 160 170 180 bm0384 VHTNEVTVLLGDNWFAKCSAKQAVGLVEHRKEHVRKTIDDLKKVMKNFESRVEFTEDLQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 VHTNEVTVLLGDNWFAKCSAKQAVGLVEHRKEHVRKTIDDLKKVMKNFESRVEFTEDLQK 100 110 120 130 140 150 190 200 210 220 230 240 bm0384 MSDAAGDIVDIREEIKCDFEFKAKHRIAHKPHSKPKTSDIFEADIANDVKSKDLLADKEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 MSDAAGDIVDIREEIKCDFEFKAKHRIAHKPHSKPKTSDIFEADIANDVKSKDLLADKEL 160 170 180 190 200 210 250 260 270 280 290 300 bm0384 WARLEELERQEELLGELDSKPDTVIANGEDTTSSEEEKEDRNTNVNAMHQVTDSHTPCHK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 WARLEELERQEELLGELDSKPDTVIANGEDTTSSEEEKEDRNTNVNAMHQVTDSHTPCHK 220 230 240 250 260 270 310 320 330 340 350 360 bm0384 DVASSEPFSGQVNSQLNCSVNGSSSYHSDDDDDDDDDDDDNIDDDDGDNDHEALGVGDNS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 DVASSEPFSGQVNSQLNCSVNGSSSYHSDDDDDDDDDDDDNIDDDDGDNDHEALGVGDNS 280 290 300 310 320 330 370 380 390 400 410 420 bm0384 IPTIYFSHTVEPKRVRINTGKNTTLKFSEKKEEAKRKRKNSTGSGHSAQELPTIRTPADI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 IPTIYFSHTVEPKRVRINTGKNTTLKFSEKKEEAKRKRKNSTGSGHSAQELPTIRTPADI 340 350 360 370 380 390 430 440 450 460 470 480 bm0384 YRAFVDVVNGEYVPRKSILKSRSRENSVCSDTSESSAAEFDDRRGVLRSISCEEATCSDT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 YRAFVDVVNGEYVPRKSILKSRSRENSVCSDTSESSAAEFDDRRGVLRSISCEEATCSDT 400 410 420 430 440 450 490 500 510 520 530 540 bm0384 SESILEEEPQENQKKLLPLSVTPEAFSGTVIEKEFVSPSLTPPPAIAHPALPTIPERKEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 SESILEEEPQENQKKLLPLSVTPEAFSGTVIEKEFVSPSLTPPPAIAHPALPTIPERKEV 460 470 480 490 500 510 550 560 bm0384 LLEASEETGKRVSKFKAARLQQKD :::::::::::::::::::::::: gi|168 LLEASEETGKRVSKFKAARLQQKD 520 530 >>gi|114676543|ref|XP_001148355.1| PREDICTED: RPB5-media (568 aa) initn: 4160 init1: 2131 opt: 3517 Z-score: 3348.4 bits: 629.4 E(): 9.6e-178 Smith-Waterman score: 3517; 97.468% identity (97.830% similar) in 553 aa overlap (17-566:16-568) 10 20 30 40 50 60 bm0384 GRARGRWATAGRAACAGAGSGLTRRAEARGPVMEAPTVETPPDPSPPSAPAPVLVPLRAP :: ::::::::::: :::::::::::: :::::. :::::: gi|114 MQTQPSSGHRQPQPRGAVLGLTRRAEARGPSWEAPTVETPPDPSXXSAPAPAPVPLRAP 10 20 30 40 50 70 80 90 100 110 120 bm0384 DVARLREEQEKVVTNCQERIQHWKKVDNDYNALRERLSTLPDKLSYNIMVPFGPFAFMPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 DVARLREEQEKVVTNCQERIQHWKKVDNDYNALRERLSTLPDKLSYNIMVPFGPFAFMPG 60 70 80 90 100 110 130 140 150 160 170 180 bm0384 KLVHTNEVTVLLGDNWFAKCSAKQAVGLVEHRKEHVRKTIDDLKKVMKNFESRVEFTEDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 KLVHTNEVTVLLGDNWFAKCSAKQAVGLVEHRKEHVRKTIDDLKKVMKNFESRVEFTEDL 120 130 140 150 160 170 190 200 210 220 230 240 bm0384 QKMSDAAGDIVDIREEIKCDFEFKAKHRIAHKPHSKPKTSDIFEADIANDVKSKDLLADK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 QKMSDAAGDIVDIREEIKCDFEFKAKHRIAHKPHSKPKTSDIFEADIANDVKSKDLLADK 180 190 200 210 220 230 250 260 270 280 290 300 bm0384 ELWARLEELERQEELLGELDSKPDTVIANGEDTTSSEEEKEDRNTNVNAMHQVTDSHTPC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 ELWARLEELERQEELLGELDSKPDTVIANGEDTTSSEEEKEDRNTNVNAMHQVTDSHTPC 240 250 260 270 280 290 310 320 330 340 350 bm0384 HKDVASSEPFSGQVNSQLNCSVNGSSSYHSDDDDDDD---DDDDDNIDDDDGDNDHEALG ::::::::::::::::::::::::::::::::::::: :::::::::: ::::::::: gi|114 HKDVASSEPFSGQVNSQLNCSVNGSSSYHSDDDDDDDEDDDDDDDNIDDDGGDNDHEALG 300 310 320 330 340 350 360 370 380 390 400 410 bm0384 VGDNSIPTIYFSHTVEPKRVRINTGKNTTLKFSEKKEEAKRKRKNSTGSGHSAQELPTIR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 VGDNSIPTIYFSHTVEPKRVRINTGKNTTLKFSEKKEEAKRKRKNSTGSGHSAQELPTIR 360 370 380 390 400 410 420 430 440 450 460 470 bm0384 TPADIYRAFVDVVNGEYVPRKSILKSRSRENSVCSDTSESSAAEFDDRRGVLRSISCEEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 TPADIYRAFVDVVNGEYVPRKSILKSRSRENSVCSDTSESSAAEFDDRRGVLRSISCEEA 420 430 440 450 460 470 480 490 500 510 520 530 bm0384 TCSDTSESILEEEPQENQKKLLPLSVTPEAFSGTVIEKEFVSPSLTPPPAIAHPALPTIP ::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::: gi|114 TCSDTSESILEEEPQENQKKLLPLSVTPEAFSGTVIEKEFVSPSLTPHPAIAHPALPTIP 480 490 500 510 520 530 540 550 560 bm0384 ERKEVLLEASEETGKRVSKFKAARLQQKD ::::::::::::::::::::::::::::. gi|114 ERKEVLLEASEETGKRVSKFKAARLQQKN 540 550 560 >>gi|182676402|sp|O94763.2|RMP_HUMAN RecName: Full=Uncon (534 aa) initn: 3515 init1: 3515 opt: 3515 Z-score: 3346.8 bits: 629.1 E(): 1.2e-177 Smith-Waterman score: 3515; 99.625% identity (99.813% similar) in 534 aa overlap (33-566:1-534) 10 20 30 40 50 60 bm0384 ARGRWATAGRAACAGAGSGLTRRAEARGPVMEAPTVETPPDPSPPSAPAPVLVPLRAPDV :::::: :::::::::::::.::::::::: gi|182 MEAPTVGTPPDPSPPSAPAPALVPLRAPDV 10 20 30 70 80 90 100 110 120 bm0384 ARLREEQEKVVTNCQERIQHWKKVDNDYNALRERLSTLPDKLSYNIMVPFGPFAFMPGKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|182 ARLREEQEKVVTNCQERIQHWKKVDNDYNALRERLSTLPDKLSYNIMVPFGPFAFMPGKL 40 50 60 70 80 90 130 140 150 160 170 180 bm0384 VHTNEVTVLLGDNWFAKCSAKQAVGLVEHRKEHVRKTIDDLKKVMKNFESRVEFTEDLQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|182 VHTNEVTVLLGDNWFAKCSAKQAVGLVEHRKEHVRKTIDDLKKVMKNFESRVEFTEDLQK 100 110 120 130 140 150 190 200 210 220 230 240 bm0384 MSDAAGDIVDIREEIKCDFEFKAKHRIAHKPHSKPKTSDIFEADIANDVKSKDLLADKEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|182 MSDAAGDIVDIREEIKCDFEFKAKHRIAHKPHSKPKTSDIFEADIANDVKSKDLLADKEL 160 170 180 190 200 210 250 260 270 280 290 300 bm0384 WARLEELERQEELLGELDSKPDTVIANGEDTTSSEEEKEDRNTNVNAMHQVTDSHTPCHK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|182 WARLEELERQEELLGELDSKPDTVIANGEDTTSSEEEKEDRNTNVNAMHQVTDSHTPCHK 220 230 240 250 260 270 310 320 330 340 350 360 bm0384 DVASSEPFSGQVNSQLNCSVNGSSSYHSDDDDDDDDDDDDNIDDDDGDNDHEALGVGDNS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|182 DVASSEPFSGQVNSQLNCSVNGSSSYHSDDDDDDDDDDDDNIDDDDGDNDHEALGVGDNS 280 290 300 310 320 330 370 380 390 400 410 420 bm0384 IPTIYFSHTVEPKRVRINTGKNTTLKFSEKKEEAKRKRKNSTGSGHSAQELPTIRTPADI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|182 IPTIYFSHTVEPKRVRINTGKNTTLKFSEKKEEAKRKRKNSTGSGHSAQELPTIRTPADI 340 350 360 370 380 390 430 440 450 460 470 480 bm0384 YRAFVDVVNGEYVPRKSILKSRSRENSVCSDTSESSAAEFDDRRGVLRSISCEEATCSDT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|182 YRAFVDVVNGEYVPRKSILKSRSRENSVCSDTSESSAAEFDDRRGVLRSISCEEATCSDT 400 410 420 430 440 450 490 500 510 520 530 540 bm0384 SESILEEEPQENQKKLLPLSVTPEAFSGTVIEKEFVSPSLTPPPAIAHPALPTIPERKEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|182 SESILEEEPQENQKKLLPLSVTPEAFSGTVIEKEFVSPSLTPPPAIAHPALPTIPERKEV 460 470 480 490 500 510 550 560 bm0384 LLEASEETGKRVSKFKAARLQQKD :::::::::::::::::::::::: gi|182 LLEASEETGKRVSKFKAARLQQKD 520 530 >>gi|19924159|ref|NP_003787.2| RPB5-mediating protein is (535 aa) initn: 2103 init1: 2103 opt: 3512 Z-score: 3344.0 bits: 628.5 E(): 1.7e-177 Smith-Waterman score: 3512; 99.626% identity (99.813% similar) in 535 aa overlap (33-566:1-535) 10 20 30 40 50 60 bm0384 ARGRWATAGRAACAGAGSGLTRRAEARGPVMEAPTVETPPDPSPPSAPAPVLVPLRAPDV ::::::::::::::::::::.::::::::: gi|199 MEAPTVETPPDPSPPSAPAPALVPLRAPDV 10 20 30 70 80 90 100 110 120 bm0384 ARLREEQEKVVTNCQERIQHWKKVDNDYNALRERLSTLPDKLSYNIMVPFGPFAFMPGKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|199 ARLREEQEKVVTNCQERIQHWKKVDNDYNALRERLSTLPDKLSYNIMVPFGPFAFMPGKL 40 50 60 70 80 90 130 140 150 160 170 180 bm0384 VHTNEVTVLLGDNWFAKCSAKQAVGLVEHRKEHVRKTIDDLKKVMKNFESRVEFTEDLQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|199 VHTNEVTVLLGDNWFAKCSAKQAVGLVEHRKEHVRKTIDDLKKVMKNFESRVEFTEDLQK 100 110 120 130 140 150 190 200 210 220 230 240 bm0384 MSDAAGDIVDIREEIKCDFEFKAKHRIAHKPHSKPKTSDIFEADIANDVKSKDLLADKEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|199 MSDAAGDIVDIREEIKCDFEFKAKHRIAHKPHSKPKTSDIFEADIANDVKSKDLLADKEL 160 170 180 190 200 210 250 260 270 280 290 300 bm0384 WARLEELERQEELLGELDSKPDTVIANGEDTTSSEEEKEDRNTNVNAMHQVTDSHTPCHK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|199 WARLEELERQEELLGELDSKPDTVIANGEDTTSSEEEKEDRNTNVNAMHQVTDSHTPCHK 220 230 240 250 260 270 310 320 330 340 350 360 bm0384 DVASSEPFSGQVNSQLNCSVNGSSSYHSDDDDDDDDDDDD-NIDDDDGDNDHEALGVGDN :::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::: gi|199 DVASSEPFSGQVNSQLNCSVNGSSSYHSDDDDDDDDDDDDDNIDDDDGDNDHEALGVGDN 280 290 300 310 320 330 370 380 390 400 410 420 bm0384 SIPTIYFSHTVEPKRVRINTGKNTTLKFSEKKEEAKRKRKNSTGSGHSAQELPTIRTPAD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|199 SIPTIYFSHTVEPKRVRINTGKNTTLKFSEKKEEAKRKRKNSTGSGHSAQELPTIRTPAD 340 350 360 370 380 390 430 440 450 460 470 480 bm0384 IYRAFVDVVNGEYVPRKSILKSRSRENSVCSDTSESSAAEFDDRRGVLRSISCEEATCSD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|199 IYRAFVDVVNGEYVPRKSILKSRSRENSVCSDTSESSAAEFDDRRGVLRSISCEEATCSD 400 410 420 430 440 450 490 500 510 520 530 540 bm0384 TSESILEEEPQENQKKLLPLSVTPEAFSGTVIEKEFVSPSLTPPPAIAHPALPTIPERKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|199 TSESILEEEPQENQKKLLPLSVTPEAFSGTVIEKEFVSPSLTPPPAIAHPALPTIPERKE 460 470 480 490 500 510 550 560 bm0384 VLLEASEETGKRVSKFKAARLQQKD ::::::::::::::::::::::::: gi|199 VLLEASEETGKRVSKFKAARLQQKD 520 530 >>gi|158257772|dbj|BAF84859.1| unnamed protein product [ (534 aa) initn: 3509 init1: 3509 opt: 3509 Z-score: 3341.1 bits: 628.0 E(): 2.4e-177 Smith-Waterman score: 3509; 99.438% identity (99.813% similar) in 534 aa overlap (33-566:1-534) 10 20 30 40 50 60 bm0384 ARGRWATAGRAACAGAGSGLTRRAEARGPVMEAPTVETPPDPSPPSAPAPVLVPLRAPDV :::::: :::::::::::::.::::::::: gi|158 MEAPTVGTPPDPSPPSAPAPALVPLRAPDV 10 20 30 70 80 90 100 110 120 bm0384 ARLREEQEKVVTNCQERIQHWKKVDNDYNALRERLSTLPDKLSYNIMVPFGPFAFMPGKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 ARLREEQEKVVTNCQERIQHWKKVDNDYNALRERLSTLPDKLSYNIMVPFGPFAFMPGKL 40 50 60 70 80 90 130 140 150 160 170 180 bm0384 VHTNEVTVLLGDNWFAKCSAKQAVGLVEHRKEHVRKTIDDLKKVMKNFESRVEFTEDLQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 VHTNEVTVLLGDNWFAKCSAKQAVGLVEHRKEHVRKTIDDLKKVMKNFESRVEFTEDLQK 100 110 120 130 140 150 190 200 210 220 230 240 bm0384 MSDAAGDIVDIREEIKCDFEFKAKHRIAHKPHSKPKTSDIFEADIANDVKSKDLLADKEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 MSDAAGDIVDIREEIKCDFEFKAKHRIAHKPHSKPKTSDIFEADIANDVKSKDLLADKEL 160 170 180 190 200 210 250 260 270 280 290 300 bm0384 WARLEELERQEELLGELDSKPDTVIANGEDTTSSEEEKEDRNTNVNAMHQVTDSHTPCHK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 WARLEELERQEELLGELDSKPDTVIANGEDTTSSEEEKEDRNTNVNAMHQVTDSHTPCHK 220 230 240 250 260 270 310 320 330 340 350 360 bm0384 DVASSEPFSGQVNSQLNCSVNGSSSYHSDDDDDDDDDDDDNIDDDDGDNDHEALGVGDNS :::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::: gi|158 DVASSEPFSGQVNSQLNCSVNGSSSYHSDDDDDDDDDDDDNIDEDDGDNDHEALGVGDNS 280 290 300 310 320 330 370 380 390 400 410 420 bm0384 IPTIYFSHTVEPKRVRINTGKNTTLKFSEKKEEAKRKRKNSTGSGHSAQELPTIRTPADI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 IPTIYFSHTVEPKRVRINTGKNTTLKFSEKKEEAKRKRKNSTGSGHSAQELPTIRTPADI 340 350 360 370 380 390 430 440 450 460 470 480 bm0384 YRAFVDVVNGEYVPRKSILKSRSRENSVCSDTSESSAAEFDDRRGVLRSISCEEATCSDT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 YRAFVDVVNGEYVPRKSILKSRSRENSVCSDTSESSAAEFDDRRGVLRSISCEEATCSDT 400 410 420 430 440 450 490 500 510 520 530 540 bm0384 SESILEEEPQENQKKLLPLSVTPEAFSGTVIEKEFVSPSLTPPPAIAHPALPTIPERKEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 SESILEEEPQENQKKLLPLSVTPEAFSGTVIEKEFVSPSLTPPPAIAHPALPTIPERKEV 460 470 480 490 500 510 550 560 bm0384 LLEASEETGKRVSKFKAARLQQKD :::::::::::::::::::::::: gi|158 LLEASEETGKRVSKFKAARLQQKD 520 530 >>gi|109124178|ref|XP_001085349.1| PREDICTED: similar to (537 aa) initn: 3423 init1: 1769 opt: 3348 Z-score: 3188.1 bits: 599.7 E(): 8.2e-169 Smith-Waterman score: 3348; 95.903% identity (97.393% similar) in 537 aa overlap (33-566:1-537) 10 20 30 40 50 60 bm0384 ARGRWATAGRAACAGAGSGLTRRAEARGPVMEAPTVETPPDPSPPSAPAPVLVPLRAPDV ::::::::::::: ::::.:: :::::::: gi|109 MEAPTVETPPDPSSPSAPVPVPVPLRAPDV 10 20 30 70 80 90 100 110 120 bm0384 ARLREEQEKVVTNCQERIQHWKKVDNDYNALRERLSTLPDKLSYNIMVPFGPFAFMPGKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 ARLREEQEKVVTNCQERIQHWKKVDNDYNALRERLSTLPDKLSYNIMVPFGPFAFMPGKL 40 50 60 70 80 90 130 140 150 160 170 180 bm0384 VHTNEVTVLLGDNWFAKCSAKQAVGLVEHRKEHVRKTIDDLKKVMKNFESRVEFTEDLQK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 VHTNEVTVLLGDNWFAKCSAKQAVGLVEHRKEHVRKTIDDLKKVMKNFESRVEFTEDLQK 100 110 120 130 140 150 190 200 210 220 230 240 bm0384 MSDAAGDIVDIREEIKCDFEFKAKHRIAHKPHSKPKTSDIFEADIANDVKSKDLLADKEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 MSDAAGDIVDIREEIKCDFEFKAKHRIAHKPHSKPKTSDIFEADIANDVKSKDLLADKEL 160 170 180 190 200 210 250 260 270 280 290 300 bm0384 WARLEELERQEELLGELDSKPDTVIANGEDTTSSEEEKEDRNTNVNAMHQVTDSHT--PC :::::::::::::::::::::: :::::::::::::::::.:::::::.:::: :: : gi|109 WARLEELERQEELLGELDSKPDIVIANGEDTTSSEEEKEDHNTNVNAMYQVTDCHTLDSC 220 230 240 250 260 270 310 320 330 340 350 360 bm0384 HKDVASSEPFSGQVNSQLNCSVNGSSSYHSDDDDDDDDDDDDNIDDDDGDNDHEALGVGD ::::::::::: :..:::::::::::::::: :::: :.::::::: :::: :::::::: gi|109 HKDVASSEPFSVQMSSQLNCSVNGSSSYHSDGDDDDVDEDDDNIDDHDGDNAHEALGVGD 280 290 300 310 320 330 370 380 390 400 410 420 bm0384 NSIPTIYFSHTVEPKRVRINTGKNTTLKFSEKKEEAKRKRKNSTGSGHSAQELPTIRTPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 NSIPTIYFSHTVEPKRVRINTGKNTTLKFSEKKEEAKRKRKNSTGSGHSAQELPTIRTPA 340 350 360 370 380 390 430 440 450 460 470 480 bm0384 DIYRAFVDVVNGEYVPRKSILKSRSRENSVCSDTSESSAAEFDDRRGVLRSISCEEATCS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 DIYRAFVDVVNGEYVPRKSILKSRSRENSVCSDTSESSAAEFDDRRGVLRSISCEEATCS 400 410 420 430 440 450 490 500 510 520 530 bm0384 DTSESILEEEPQEN-QKKLLPLSVTPEAFSGTVIEKEFVSPSLTPPPAIAHPALPTIPER :::::::::::::. :::::::::::::::::::::::::::::: :::::::::::::: gi|109 DTSESILEEEPQESHQKKLLPLSVTPEAFSGTVIEKEFVSPSLTPHPAIAHPALPTIPER 460 470 480 490 500 510 540 550 560 bm0384 KEVLLEASEETGKRVSKFKAARLQQKD ::::::::::::::::::::::::::. gi|109 KEVLLEASEETGKRVSKFKAARLQQKN 520 530 >>gi|109124180|ref|XP_001085459.1| PREDICTED: similar to (547 aa) initn: 3336 init1: 1682 opt: 3273 Z-score: 3116.7 bits: 586.5 E(): 7.7e-165 Smith-Waterman score: 3318; 94.150% identity (95.612% similar) in 547 aa overlap (33-566:1-547) 10 20 30 40 50 bm0384 ARGRWATAGRAACAGAGSGLTRRAEARGPVMEAPTVETPPDPSPPSA----------PAP ::::::::::::: ::: :.: gi|109 MEAPTVETPPDPSSPSASASAPAPAPAPVP 10 20 30 60 70 80 90 100 110 bm0384 VLVPLRAPDVARLREEQEKVVTNCQERIQHWKKVDNDYNALRERLSTLPDKLSYNIMVPF : :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 VPVPLRAPDVARLREEQEKVVTNCQERIQHWKKVDNDYNALRERLSTLPDKLSYNIMVPF 40 50 60 70 80 90 120 130 140 150 160 170 bm0384 GPFAFMPGKLVHTNEVTVLLGDNWFAKCSAKQAVGLVEHRKEHVRKTIDDLKKVMKNFES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 GPFAFMPGKLVHTNEVTVLLGDNWFAKCSAKQAVGLVEHRKEHVRKTIDDLKKVMKNFES 100 110 120 130 140 150 180 190 200 210 220 230 bm0384 RVEFTEDLQKMSDAAGDIVDIREEIKCDFEFKAKHRIAHKPHSKPKTSDIFEADIANDVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 RVEFTEDLQKMSDAAGDIVDIREEIKCDFEFKAKHRIAHKPHSKPKTSDIFEADIANDVK 160 170 180 190 200 210 240 250 260 270 280 290 bm0384 SKDLLADKELWARLEELERQEELLGELDSKPDTVIANGEDTTSSEEEKEDRNTNVNAMHQ :::::::::::::::::::::::::::::::: :::::::::::::::::.:::::::.: gi|109 SKDLLADKELWARLEELERQEELLGELDSKPDIVIANGEDTTSSEEEKEDHNTNVNAMYQ 220 230 240 250 260 270 300 310 320 330 340 350 bm0384 VTDSHT--PCHKDVASSEPFSGQVNSQLNCSVNGSSSYHSDDDDDDDDDDDDNIDDDDGD ::: :: :::::::::::: :..:::::::::::::::: :::: :.::::::: ::: gi|109 VTDCHTLDSCHKDVASSEPFSVQMSSQLNCSVNGSSSYHSDGDDDDVDEDDDNIDDHDGD 280 290 300 310 320 330 360 370 380 390 400 410 bm0384 NDHEALGVGDNSIPTIYFSHTVEPKRVRINTGKNTTLKFSEKKEEAKRKRKNSTGSGHSA : :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 NAHEALGVGDNSIPTIYFSHTVEPKRVRINTGKNTTLKFSEKKEEAKRKRKNSTGSGHSA 340 350 360 370 380 390 420 430 440 450 460 470 bm0384 QELPTIRTPADIYRAFVDVVNGEYVPRKSILKSRSRENSVCSDTSESSAAEFDDRRGVLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 QELPTIRTPADIYRAFVDVVNGEYVPRKSILKSRSRENSVCSDTSESSAAEFDDRRGVLR 400 410 420 430 440 450 480 490 500 510 520 bm0384 SISCEEATCSDTSESILEEEPQEN-QKKLLPLSVTPEAFSGTVIEKEFVSPSLTPPPAIA :::::::::::::::::::::::. :::::::::::::::::::::::::::::: :::: gi|109 SISCEEATCSDTSESILEEEPQESHQKKLLPLSVTPEAFSGTVIEKEFVSPSLTPHPAIA 460 470 480 490 500 510 530 540 550 560 bm0384 HPALPTIPERKEVLLEASEETGKRVSKFKAARLQQKD ::::::::::::::::::::::::::::::::::::. gi|109 HPALPTIPERKEVLLEASEETGKRVSKFKAARLQQKN 520 530 540 >>gi|45501337|gb|AAH67259.1| Chromosome 19 open reading (494 aa) initn: 3170 init1: 3170 opt: 3172 Z-score: 3021.2 bits: 568.7 E(): 1.6e-159 Smith-Waterman score: 3172; 99.180% identity (99.590% similar) in 488 aa overlap (79-566:7-494) 50 60 70 80 90 100 bm0384 APAPVLVPLRAPDVARLREEQEKVVTNCQERIQHWKKVDNDYNALRERLSTLPDKLSYNI : .. ::::::::::::::::::::::::: gi|455 MWRGCARSRKRKKVDNDYNALRERLSTLPDKLSYNI 10 20 30 110 120 130 140 150 160 bm0384 MVPFGPFAFMPGKLVHTNEVTVLLGDNWFAKCSAKQAVGLVEHRKEHVRKTIDDLKKVMK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|455 MVPFGPFAFMPGKLVHTNEVTVLLGDNWFAKCSAKQAVGLVEHRKEHVRKTIDDLKKVMK 40 50 60 70 80 90 170 180 190 200 210 220 bm0384 NFESRVEFTEDLQKMSDAAGDIVDIREEIKCDFEFKAKHRIAHKPHSKPKTSDIFEADIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|455 NFESRVEFTEDLQKMSDAAGDIVDIREEIKCDFEFKAKHRIAHKPHSKPKTSDIFEADIA 100 110 120 130 140 150 230 240 250 260 270 280 bm0384 NDVKSKDLLADKELWARLEELERQEELLGELDSKPDTVIANGEDTTSSEEEKEDRNTNVN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|455 NDVKSKDLLADKELWARLEELERQEELLGELDSKPDTVIANGEDTTSSEEEKEDRNTNVN 160 170 180 190 200 210 290 300 310 320 330 340 bm0384 AMHQVTDSHTPCHKDVASSEPFSGQVNSQLNCSVNGSSSYHSDDDDDDDDDDDDNIDDDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|455 AMHQVTDSHTPCHKDVASSEPFSGQVNSQLNCSVNGSSSYHSDDDDDDDDDDDDNIDDDD 220 230 240 250 260 270 350 360 370 380 390 400 bm0384 GDNDHEALGVGDNSIPTIYFSHTVEPKRVRINTGKNTTLKFSEKKEEAKRKRKNSTGSGH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|455 GDNDHEALGVGDNSIPTIYFSHTVEPKRVRINTGKNTTLKFSEKKEEAKRKRKNSTGSGH 280 290 300 310 320 330 410 420 430 440 450 460 bm0384 SAQELPTIRTPADIYRAFVDVVNGEYVPRKSILKSRSRENSVCSDTSESSAAEFDDRRGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|455 SAQELPTIRTPADIYRAFVDVVNGEYVPRKSILKSRSRENSVCSDTSESSAAEFDDRRGV 340 350 360 370 380 390 470 480 490 500 510 520 bm0384 LRSISCEEATCSDTSESILEEEPQENQKKLLPLSVTPEAFSGTVIEKEFVSPSLTPPPAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|455 LRSISCEEATCSDTSESILEEEPQENQKKLLPLSVTPEAFSGTVIEKEFVSPSLTPPPAI 400 410 420 430 440 450 530 540 550 560 bm0384 AHPALPTIPERKEVLLEASEETGKRVSKFKAARLQQKD :::::::::::::::::::::::::::::::::::::: gi|455 AHPALPTIPERKEVLLEASEETGKRVSKFKAARLQQKD 460 470 480 490 >>gi|19924161|ref|NP_604431.1| RPB5-mediating protein is (495 aa) initn: 1749 init1: 1749 opt: 3160 Z-score: 3009.8 bits: 566.6 E(): 6.9e-159 Smith-Waterman score: 3160; 98.978% identity (99.387% similar) in 489 aa overlap (79-566:7-495) 50 60 70 80 90 100 bm0384 APAPVLVPLRAPDVARLREEQEKVVTNCQERIQHWKKVDNDYNALRERLSTLPDKLSYNI : .. ::::::::::::::::::::::::: gi|199 MWRGCARSRKRKKVDNDYNALRERLSTLPDKLSYNI 10 20 30 110 120 130 140 150 160 bm0384 MVPFGPFAFMPGKLVHTNEVTVLLGDNWFAKCSAKQAVGLVEHRKEHVRKTIDDLKKVMK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|199 MVPFGPFAFMPGKLVHTNEVTVLLGDNWFAKCSAKQAVGLVEHRKEHVRKTIDDLKKVMK 40 50 60 70 80 90 170 180 190 200 210 220 bm0384 NFESRVEFTEDLQKMSDAAGDIVDIREEIKCDFEFKAKHRIAHKPHSKPKTSDIFEADIA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|199 NFESRVEFTEDLQKMSDAAGDIVDIREEIKCDFEFKAKHRIAHKPHSKPKTSDIFEADIA 100 110 120 130 140 150 230 240 250 260 270 280 bm0384 NDVKSKDLLADKELWARLEELERQEELLGELDSKPDTVIANGEDTTSSEEEKEDRNTNVN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|199 NDVKSKDLLADKELWARLEELERQEELLGELDSKPDTVIANGEDTTSSEEEKEDRNTNVN 160 170 180 190 200 210 290 300 310 320 330 340 bm0384 AMHQVTDSHTPCHKDVASSEPFSGQVNSQLNCSVNGSSSYHSDDDDDDDDDDDD-NIDDD :::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::: gi|199 AMHQVTDSHTPCHKDVASSEPFSGQVNSQLNCSVNGSSSYHSDDDDDDDDDDDDDNIDDD 220 230 240 250 260 270 350 360 370 380 390 400 bm0384 DGDNDHEALGVGDNSIPTIYFSHTVEPKRVRINTGKNTTLKFSEKKEEAKRKRKNSTGSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|199 DGDNDHEALGVGDNSIPTIYFSHTVEPKRVRINTGKNTTLKFSEKKEEAKRKRKNSTGSG 280 290 300 310 320 330 410 420 430 440 450 460 bm0384 HSAQELPTIRTPADIYRAFVDVVNGEYVPRKSILKSRSRENSVCSDTSESSAAEFDDRRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|199 HSAQELPTIRTPADIYRAFVDVVNGEYVPRKSILKSRSRENSVCSDTSESSAAEFDDRRG 340 350 360 370 380 390 470 480 490 500 510 520 bm0384 VLRSISCEEATCSDTSESILEEEPQENQKKLLPLSVTPEAFSGTVIEKEFVSPSLTPPPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|199 VLRSISCEEATCSDTSESILEEEPQENQKKLLPLSVTPEAFSGTVIEKEFVSPSLTPPPA 400 410 420 430 440 450 530 540 550 560 bm0384 IAHPALPTIPERKEVLLEASEETGKRVSKFKAARLQQKD ::::::::::::::::::::::::::::::::::::::: gi|199 IAHPALPTIPERKEVLLEASEETGKRVSKFKAARLQQKD 460 470 480 490 >>gi|3970833|dbj|BAA34781.1| RPB5 meidating protein [Hom (508 aa) initn: 3160 init1: 3160 opt: 3160 Z-score: 3009.7 bits: 566.6 E(): 7e-159 Smith-Waterman score: 3160; 99.793% identity (99.793% similar) in 483 aa overlap (84-566:26-508) 60 70 80 90 100 110 bm0384 LVPLRAPDVARLREEQEKVVTNCQERIQHWKKVDNDYNALRERLSTLPDKLSYNIMVPFG :::::::::::::::::::::::::::::: gi|397 MRLGNVDFTLGSNVPCVYLVFSVNRKKVDNDYNALRERLSTLPDKLSYNIMVPFG 10 20 30 40 50 120 130 140 150 160 170 bm0384 PFAFMPGKLVHTNEVTVLLGDNWFAKCSAKQAVGLVEHRKEHVRKTIDDLKKVMKNFESR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|397 PFAFMPGKLVHTNEVTVLLGDNWFAKCSAKQAVGLVEHRKEHVRKTIDDLKKVMKNFESR 60 70 80 90 100 110 180 190 200 210 220 230 bm0384 VEFTEDLQKMSDAAGDIVDIREEIKCDFEFKAKHRIAHKPHSKPKTSDIFEADIANDVKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|397 VEFTEDLQKMSDAAGDIVDIREEIKCDFEFKAKHRIAHKPHSKPKTSDIFEADIANDVKS 120 130 140 150 160 170 240 250 260 270 280 290 bm0384 KDLLADKELWARLEELERQEELLGELDSKPDTVIANGEDTTSSEEEKEDRNTNVNAMHQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|397 KDLLADKELWARLEELERQEELLGELDSKPDTVIANGEDTTSSEEEKEDRNTNVNAMHQV 180 190 200 210 220 230 300 310 320 330 340 350 bm0384 TDSHTPCHKDVASSEPFSGQVNSQLNCSVNGSSSYHSDDDDDDDDDDDDNIDDDDGDNDH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|397 TDSHTPCHKDVASSEPFSGQVNSQLNCSVNGSSSYHSDDDDDDDDDDDDNIDDDDGDNDH 240 250 260 270 280 290 360 370 380 390 400 410 bm0384 EALGVGDNSIPTIYFSHTVEPKRVRINTGKNTTLKFSEKKEEAKRKRKNSTGSGHSAQEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|397 EALGVGDNSIPTIYFSHTVEPKRVRINTGKNTTLKFSEKKEEAKRKRKNSTGSGHSAQEL 300 310 320 330 340 350 420 430 440 450 460 470 bm0384 PTIRTPADIYRAFVDVVNGEYVPRKSILKSRSRENSVCSDTSESSAAEFDDRRGVLRSIS ::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::: gi|397 PTIRTPADIYRAFVDVVNGEYVPRKSILKSRSRENSVCSDTSESSAAEFDDGRGVLRSIS 360 370 380 390 400 410 480 490 500 510 520 530 bm0384 CEEATCSDTSESILEEEPQENQKKLLPLSVTPEAFSGTVIEKEFVSPSLTPPPAIAHPAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|397 CEEATCSDTSESILEEEPQENQKKLLPLSVTPEAFSGTVIEKEFVSPSLTPPPAIAHPAL 420 430 440 450 460 470 540 550 560 bm0384 PTIPERKEVLLEASEETGKRVSKFKAARLQQKD ::::::::::::::::::::::::::::::::: gi|397 PTIPERKEVLLEASEETGKRVSKFKAARLQQKD 480 490 500 566 residues in 1 query sequences 3071326396 residues in 8985982 library sequences Tcomplib [34.26] (8 proc) start: Wed Jun 17 23:51:48 2009 done: Wed Jun 17 23:54:49 2009 Total Scan time: 1180.640 Total Display time: 0.190 Function used was FASTA [version 34.26.5 April 26, 2007]