hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090617/iprscan-20090617-23545090/chunk_1/iprscan-20090617-23545090.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: bm03840
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
PF02996.8.fs Prefoldin subunit                              45.6      2e-12   1
PF02996.8.ls Prefoldin subunit                              43.5    6.8e-10   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
PF02996.8.fs   1/1      69   165 ..     1   100 [.    45.6    2e-12
PF02996.8.ls   1/1      69   189 ..     1   122 []    43.5  6.8e-10

Alignments of top-scoring domains:
PF02996.8.fs: domain 1 of 1, from 69 to 165: score 45.6, E = 2e-12
                   *->lkqeiesLqaelaaLreaieeleksletlktlkkkeedegkevlvpl
                       +  + + q ++  +++  +++ +++e+l+tl +   + ++ ++vp 
     bm03840    69    QEKVVTNCQERIQHWKKVDNDYNALRERLSTLPD---KLSYNIMVPF 112  

                   gaglfvkaevkdtdkvlVdlGagyyvEksleeAieildkrieelekqlek
                   g  +f+++++++t++v+V lG + ++++s+  A+ +++ r+e++ k +++
     bm03840   113 GPFAFMPGKLVHTNEVTVLLGDNWFAKCSAKQAVGLVEHRKEHVRKTIDD 162  

                   lee<-*
                   l++   
     bm03840   163 LKK    165  

PF02996.8.ls: domain 1 of 1, from 69 to 189: score 43.5, E = 6.8e-10
                   *->lkqeiesLqaelaaLreaieeleksletlktlkkkeedegkevlvpl
                       +  + + q ++  +++  +++ +++e+l+tl +   + ++ ++vp 
     bm03840    69    QEKVVTNCQERIQHWKKVDNDYNALRERLSTLPD---KLSYNIMVPF 112  

                   gaglfvkaevkdtdkvlVdlGagyyvEksleeAieildkrieelekqlek
                   g  +f+++++++t++v+V lG + ++++s+  A+ +++ r+e++ k +++
     bm03840   113 GPFAFMPGKLVHTNEVTVLLGDNWFAKCSAKQAVGLVEHRKEHVRKTIDD 162  

                   leeele..kLrdqittleanlqqvqqk<-*
                   l++  ++ + r + t+ +++++ ++ +   
     bm03840   163 LKKVMKnfESRVEFTEDLQKMSDAAGD    189  

//