hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-17554824/chunk_1/iprscan-20080807-17554824.nocrc
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Query sequence: bm03854
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00467.19.ls KOW motif                                       55.8    1.3e-13   2
PF00467.19.fs KOW motif                                       52.2    2.6e-13   2
PF01585.13.ls G-patch domain                                  26.4    9.6e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01585.13.ls   1/1     163   207 ..     1    45 []    26.4  9.6e-05
PF00467.19.fs   1/2     240   273 ..     1    40 []    30.4  2.6e-07
PF00467.19.ls   1/2     240   273 ..     1    40 []    32.2  1.7e-06

Alignments of top-scoring domains:
PF01585.13.ls: domain 1 of 1, from 163 to 207: score 26.4, E = 9.6e-05
                   *->tsniGfklLqKMGWkeGqGLGkneqGikePieakikpdrkGLGae<-
                       +  G ++L+ MGWk+G+G G+  +  + P    ++p++ GLGa+  
     bm03854   163    VEAYGLAMLRGMGWKPGEGIGRTFNQVVKPRVNSLRPKGLGLGAN   207  

                   *
                    
     bm03854     -   -    

PF00467.19.fs: domain 1 of 2, from 240 to 273: score 30.4, E = 2.6e-07
                   *->fkkGdvVrVisGpfkGkkGkVvevdpkkGHgslknrVvve<-*
                      + +G  V+V+sGp++G  GkV+  dp++      +r  v    
     bm03854   240    LVPGGAVVVLSGPHRGLYGKVEGLDPDN------VRAMVR    273  

PF00467.19.ls: domain 1 of 2, from 240 to 273: score 32.2, E = 1.7e-06
                   *->fkkGdvVrVisGpfkGkkGkVvevdpkkGHgslknrVvve<-*
                      + +G  V+V+sGp++G  GkV+  dp++      +r  v    
     bm03854   240    LVPGGAVVVLSGPHRGLYGKVEGLDPDN------VRAMVR    273  

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